PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 910560
Common NameARALYDRAFT_910560
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 233aa    MW: 25931.7 Da    PI: 7.4995
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
910560genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157e-056183123
             EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
             ++C++C ++F ++  L  H++ H
   910560 61 FSCNYCQRTFYSSQALGGHQNAH 83
             89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.3E-45387IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.59E-75688No hitNo description
PROSITE profilePS5015711.6356188IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MDASIVSSST AFPYQDSLNQ SIKYEEKDVH DPSQELNLID CIDDTASIVN GSTTSTEQKL  60
FSCNYCQRTF YSSQALGGHQ NAHKRERTLA KKGQRMAASA SAFGHPYGFS PLPFHGLYNN  120
NRSLGIQAHS MSHKLSSYSG FGGHYGQVNW SRLPFDQQPA IGKLPSMENF HHHHQMMMAP  180
SVNSRTNNID RPSNTGRILE GSPTLEQWHG DKVLLSSNHH EEQQKLDLSL KL*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. Involved in the regulation of vegetative development and fertility. Modulates red light signaling in seedling photomorphogenesis. {ECO:0000269|PubMed:24808098}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap910560
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by abscisic acid (ABA). {ECO:0000269|PubMed:24808098}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0062590.0AC006259.1 Arabidopsis thaliana BAC F21J6 from chromosome V, containing KNAT3 and mapping near 60.5 cM, complete sequence.
GenBankAK2277060.0AK227706.1 Arabidopsis thaliana mRNA for ZFP3 zinc finger protein, complete cds, clone: RAFL14-29-I08.
GenBankATHZFPC0.0L39646.1 Arabidopsis thaliana zinc finger protein (ZFP3) mRNA, complete cds.
GenBankBT0083080.0BT008308.1 Arabidopsis thaliana At5g25160 gene, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002872142.11e-175zinc finger protein 3
SwissprotQ392621e-148ZFP3_ARATH; Zinc finger protein 3
TrEMBLD7M3V01e-174D7M3V0_ARALL; Uncharacterized protein
STRINGscaffold_602617.11e-175(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18932771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.11e-150zinc finger protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Joseph MP, et al.
    The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development.
    Plant Physiol., 2014. 165(3): p. 1203-1220
    [PMID:24808098]
  3. Zhang A, et al.
    The Arabidopsis Gene zinc finger protein 3(ZFP3) Is Involved in Salt Stress and Osmotic Stress Response.
    PLoS ONE, 2016. 11(12): p. e0168367
    [PMID:27977750]