PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 910303
Common NameARALYDRAFT_910303
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 341aa    MW: 39434.7 Da    PI: 8.56
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
910303genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.82.2e-06242265123
              EEETTTTEEESSHHHHHHHHHH.T CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
              y+Cp+C+++F ++  +  Hi++ H
   910303 242 YTCPKCNRVFDTSQKFAAHISSmH 265
              9*******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.87E-5240268No hitNo description
SMARTSM003550.003242265IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.93242270IPR007087Zinc finger, C2H2
PROSITE patternPS000280244265IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MTSIPNGLYS YGDDTMNIRG FTPIEMSSNL RNHESKIVQS MFNTSDHSNH HGLFSSSRAF  60
NCYQDSHVSS SSFDFSNSHM SYHMRKNMVS TFGMPSTTKI SNNPHLSQIS ITQTIKNSYS  120
AIVPTNNLIT SQNEYQRAMN PNIFNSPLYP PNFVEKESEI LNPTPLNTIF PHQTSVFRRN  180
LDMFSFSPKH HPHQYVSYHQ PVKKHCGATK HFEETFDDFD SKENGEYDGR THSLPYKKYG  240
PYTCPKCNRV FDTSQKFAAH ISSMHYKNET IEEKFKRYNA RNKKRSRKTN HNQMIHEDSR  300
NIQPEERVAK ENGGNNNIAS DIETLQHHQI VKEEPIYDLF *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00523DAPTransfer from AT5G22990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap910303
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ1315170.0AJ131517.1 Arabidopsis thaliana MYB37 homologue gene and ORF1.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002874106.10.0uncharacterized protein LOC9308097
TrEMBLD7M1L50.0D7M1L5_ARALL; Zinc finger family protein
STRINGscaffold_602360.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19241958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22990.11e-178C2H2-like zinc finger protein