PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 909483 | ||||||||
Common Name | ARALYDRAFT_909483, WRKY72 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | WRKY | ||||||||
Protein Properties | Length: 556aa MW: 59807.8 Da PI: 6.6451 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.2 | 9.4e-30 | 233 | 292 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+a+d +++++tYeg+H h+ 909483 233 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCADDMSILITTYEGTHSHS 292 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.9E-31 | 218 | 294 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.88E-27 | 226 | 294 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.3 | 228 | 294 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.8E-36 | 233 | 293 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.2E-27 | 234 | 291 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006952 | Biological Process | defense response | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 556 aa Download sequence Send to blast |
MEVLLKLPTS ESPLKDKVFG SVQVHEASKD DGDHQELESA KAEMSEVKEE NEKLKGMLER 60 IESDYKSLKL RFFDIIQQEP SNTATRNQNM VDHPKPTTTD LSSIDQEREL VSLSLGRRSS 120 SPSECTPKRE EKTDAISAEV NADEELTKAG LTLGINNGNG RETNEGLSME NRANSSHGSE 180 EAPGETWPPG KVAGKRSSPA PASGGDADGE AGQQNHVKRA RVCVRARCDT PTMNDGCQWR 240 KYGQKIAKGN PCPRAYYRCT VAPGCPVRKQ VQRCADDMSI LITTYEGTHS HSLPLSATTM 300 ASTTSAAASM LLSGSSSSSA AEMIGNNLYD NSRFNNNNKS FYSPTLHSPL HPTVTLDLTA 360 PQHSSSSSSS LPSLNFNKFS NSFQRFPSTS LNFSSTTSTS SNSSTLNLPA IWGNGYSSYT 420 PYPYNNVQFG TSNLGKTVQN SQSLTETLTK ALTSDPSFHS VIAAAISTMV GSNGEQQIVG 480 PRHSISNNIQ QTTATNNNKG CGGYFSSLLM SNIMASNQTG AAMDQPSSQL PPFSMFKNSS 540 SSSSTTNFVN NEEKS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-21 | 220 | 294 | 1 | 74 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 909483 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL353993 | 0.0 | AL353993.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F8M21 (ESSA project). | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002871650.1 | 0.0 | probable WRKY transcription factor 72 | ||||
Swissprot | Q9LXG8 | 0.0 | WRK72_ARATH; Probable WRKY transcription factor 72 | ||||
TrEMBL | D7M6R7 | 0.0 | D7M6R7_ARALL; WRKY DNA-binding protein 72 | ||||
STRING | scaffold_601540.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2959 | 28 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15130.1 | 0.0 | WRKY DNA-binding protein 72 |
Link Out ? help Back to Top | |
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Phytozome | 909483 |
Entrez Gene | 9307719 |