PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

909371

Common Name

ARALYDRAFT_909371

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

C2H2

Protein Properties

Length: 265aa MW: 30035 Da PI: 9.216

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
909371	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.7	8.8e-05	97	119	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+++++++ +L Hi+ H 909371 97 SCSVCSRVYPTSRLLSIHISEaH 119 6******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.26	69	94	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	71	94	IPR007087	Zinc finger, C2H2
SMART	SM00355	5	96	119	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	98	119	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.069	134	159	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	136	159	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MAMGMAVDTV GELGFPYWNP IRRRFSPDSP FFASGNVERE LLAKQVALDL TQDEINHLQK 60 FVETESRRIS CPIVGCPERL KSLDHFEDHY NARHTASCSV CSRVYPTSRL LSIHISEAHD 120 SFFQAKVARG YDMYECLVEG CGLKFKSYKA RHRHLIDKHK FPSTFEFFKK TQLSKKRREK 180 LQRQHVSRLK HEEDKEAASS DAMEVEDKAS VDGLVSALST LTTSDTTPSN VSFGRRHGRV 240 LTFVPRSVHK EKRTESSSAP GPTN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	174	179	KKRREK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	909371

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493748	0.0	AB493748.1 Arabidopsis thaliana At5g14140 mRNA for hypothetical protein, partial cds, clone: RAAt5g14140.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002871603.1	0.0	zinc finger protein 511
TrEMBL	D7M605	0.0	D7M605_ARALL; Uncharacterized protein
STRING	scaffold_601428.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9971	26	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14140.1	1e-180	zinc ion binding;nucleic acid binding;zinc ion binding

Link Out ? help Back to Top
Phytozome	909371
Entrez Gene	9309719