PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 909054 | ||||||||
Common Name | ARALYDRAFT_909054 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C2H2 | ||||||||
Protein Properties | Length: 270aa MW: 29857.3 Da PI: 6.8497 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.8 | 8.5e-05 | 101 | 123 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C ++F ++ L H++ H 909054 101 FSCNYCQRTFYSSQALGGHQNAH 123 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.19E-7 | 96 | 128 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.3E-4 | 99 | 127 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.635 | 101 | 128 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 103 | 123 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MESSSGKPRS SDSSCIVSAS TTLPFPDSPK LNLKNYNRDA EAARDHDQIE GEEGVRLELM 60 LAGYDSSQPQ LNQELNLLNC LEAGVVTPSF NGSSSTEQKL FSCNYCQRTF YSSQALGGHQ 120 NAHKRERTLA KRGQRMASAA AFGHPYSFAP VPFHGQYSNR SLGIQAHSMS HKLSSYNVFG 180 GEYGQINWSR IPLVQQPAIG KLTSTENHYN HHQMMIAPPL TSTCENIGRF DVGRIPVDLP 240 TSELWQRGEE LLKPAEEEQQ KNLDLSLKL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. Involved in the regulation of vegetative development and fertility. Modulates red light signaling in seedling photomorphogenesis. {ECO:0000269|PubMed:24808098}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 909054 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by abscisic acid (ABA). {ECO:0000269|PubMed:24808098}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493745 | 0.0 | AB493745.1 Arabidopsis thaliana At5g10970 mRNA for hypothetical protein, partial cds, clone: RAAt5g10970. | |||
GenBank | AL365234 | 0.0 | AL365234.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T30N20 (ESSA project). | |||
GenBank | AL391222 | 0.0 | AL391222.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T5K6 (ESSA project). | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002871446.1 | 0.0 | zinc finger protein 3 | ||||
Swissprot | Q39262 | 5e-78 | ZFP3_ARATH; Zinc finger protein 3 | ||||
TrEMBL | D7M3K4 | 0.0 | D7M3K4_ARALL; Zinc finger family protein | ||||
STRING | scaffold_601111.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1893 | 27 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10970.1 | 1e-164 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | 909054 |
Entrez Gene | 9307516 |
Publications ? help Back to Top | |||
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