PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 909007 | ||||||||
Common Name | ARALYDRAFT_909007 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | AP2 | ||||||||
Protein Properties | Length: 577aa MW: 64409.6 Da PI: 6.8005 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 31.5 | 4.5e-10 | 268 | 324 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + rk + g ++ +++Aa+a++ a++k+++ 909007 268 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEDKAARAYDLAALKYWN 324 57*******************4444.2344336655.7799999*************97 PP | |||||||
2 | AP2 | 49.6 | 9.5e-16 | 367 | 418 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g 909007 367 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 418 57****************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.57E-13 | 268 | 333 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.17E-17 | 268 | 334 | No hit | No description |
Pfam | PF00847 | 7.6E-8 | 268 | 324 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.6E-18 | 269 | 338 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-10 | 269 | 332 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.753 | 269 | 332 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.2E-6 | 270 | 281 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.30E-11 | 367 | 426 | No hit | No description |
Pfam | PF00847 | 4.0E-10 | 367 | 418 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-17 | 367 | 427 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 7.9E-31 | 368 | 432 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.111 | 368 | 426 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.4E-18 | 368 | 426 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.2E-6 | 408 | 428 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010080 | Biological Process | regulation of floral meristem growth | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0035265 | Biological Process | organ growth | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0060772 | Biological Process | leaf phyllotactic patterning | ||||
GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 577 aa Download sequence Send to blast |
MAPMTNWLTF SLSPMEMLRS SDQSQFVSYD ASSAASSSPY LLDNFYGWTN QKPQEFFKEE 60 AQLAAASMAD STILTTFVDP QSHSQNHIPK LEDFLGDSSS IVRFSDNSQT DTQDSSLTQI 120 YDPRHHHHNP NQTGFYSDHH DFKTMAGFQT AFSTNSGSEV DDSASIGRTH LTGEYLGHVV 180 ESSGPELGFH GGSTGALSLG VNVNNTNHRN DHDSNQITNH HYRGNNNGDR INNENEKTDS 240 EKEKAVVAVE TSDCSNKKIA DTFGQRTSIY RGVTRHRWTG RYEAHLWDNS CRREGQARKG 300 RQGGYDKEDK AARAYDLAAL KYWNATATTN FPITNYAKEV EEMKHMTKQE FIASLRRKSS 360 GFSRGASIYR GVTRHHQQGR WQARIGRVAG NKDLYLGTFA TEEEAAEAYD IAAIKFRGIN 420 AVTNFEMNRY DVEAIMKSAL PIGGAAKRLK LSLEAASSEQ KPILGHQLHH FQQQQQQQQQ 480 LQLQSSPNHS SINFALCPNS AVQSQQIIPC GIPFEAAALY HHQQQQQQQQ QNFFQHFPAN 540 AASDSTGSNN NSNVQGTMGL MAPNPAEFFL WPNQSY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00504 | DAP | Transfer from AT5G10510 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 909007 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY974197 | 0.0 | AY974197.1 Arabidopsis thaliana clone At5g10510 AP2/EREBP transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020876725.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL6 isoform X1 | ||||
Refseq | XP_020876726.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL6 isoform X1 | ||||
Swissprot | Q52QU2 | 0.0 | AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6 | ||||
TrEMBL | D7M2X9 | 0.0 | D7M2X9_ARALL; Uncharacterized protein | ||||
STRING | scaffold_601064.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3333 | 27 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10510.2 | 0.0 | AINTEGUMENTA-like 6 |
Link Out ? help Back to Top | |
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Phytozome | 909007 |
Entrez Gene | 9307494 |
Publications ? help Back to Top | |||
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