PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

908762

Common Name

ARALYDRAFT_908762

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 541aa MW: 59968.6 Da PI: 7.2956

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
908762	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	55.5	9.9e-18	284	333	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lr+l+P++ ++K +Ka+ L +++eYI+ Lq 908762 284 RSKHSATEQRRRSKINDRFQMLRQLIPNS----DQKRDKASFLLEVIEYIQFLQ 333 889***********************9....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.0E-23	281	353	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.225	282	332	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.8E-19	283	352	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.49E-15	284	335	No hit	No description
Pfam	PF00010	3.3E-15	284	333	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.4E-13	288	338	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0009742	Biological Process	brassinosteroid mediated signaling pathway
GO:1902448	Biological Process	positive regulation of shade avoidance
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence Send to blast
MELPQPRPFK TEGRKPTHDF LSLCSHSTVH PDPKPTPPSS QGSHLKTHDF LQPLECVGAK 60 EEVSRINTTT TSSEKPPPPA PPPPLQHVLP GGIGTYTISP IPYFHHHHQR IPKPELSPPM 120 MFNAAVQASG GNERNIVDEN SNSNCSSYAA ASSGFTLWDE SASGKKGQTR KENNVGERVN 180 MRADVAATVG QWPVVERRSQ SLTNNHMSGF SSRSSSQGSG LKSQSFMDMI RSAKGSSQED 240 DLDDEEDFIM KKESSSTSQS HRVDLRVKAD VRGSANDQKL NTPRSKHSAT EQRRRSKIND 300 RFQMLRQLIP NSDQKRDKAS FLLEVIEYIQ FLQEKADKYE TSYQGWNHEP AKLLNWQSNN 360 QQLVPEGVAF APKMEVEKNN IPVSVLATAQ GVVIDHPTTA TTSPFPLSIQ SNSFFSPVIA 420 GNPVPQFHTR VASSETVEPS PSSRSQTQPL KEEEEVEDEE DLEGNIRISS VYSQGLVKTL 480 REALENSGVD LTKASISVEI ELAKQSSSSF KDREVREPVS RTRNDDVKQT RKPKRLKTGQ 540 *

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence Send to blast

MELPQPRPFK TEGRKPTHDF LSLCSHSTVH PDPKPTPPSS QGSHLKTHDF LQPLECVGAK  60
EEVSRINTTT TSSEKPPPPA PPPPLQHVLP GGIGTYTISP IPYFHHHHQR IPKPELSPPM  120
MFNAAVQASG GNERNIVDEN SNSNCSSYAA ASSGFTLWDE SASGKKGQTR KENNVGERVN  180
MRADVAATVG QWPVVERRSQ SLTNNHMSGF SSRSSSQGSG LKSQSFMDMI RSAKGSSQED  240
DLDDEEDFIM KKESSSTSQS HRVDLRVKAD VRGSANDQKL NTPRSKHSAT EQRRRSKIND  300
RFQMLRQLIP NSDQKRDKAS FLLEVIEYIQ FLQEKADKYE TSYQGWNHEP AKLLNWQSNN  360
QQLVPEGVAF APKMEVEKNN IPVSVLATAQ GVVIDHPTTA TTSPFPLSIQ SNSFFSPVIA  420
GNPVPQFHTR VASSETVEPS PSSRSQTQPL KEEEEVEDEE DLEGNIRISS VYSQGLVKTL  480
REALENSGVD LTKASISVEI ELAKQSSSSF KDREVREPVS RTRNDDVKQT RKPKRLKTGQ  540
*

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269\|PubMed:15680330}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00498	DAP	Transfer from AT5G08130	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	908762

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353313	0.0	AK353313.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-34-P07.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002873342.1	0.0	transcription factor BIM1 isoform X1
Swissprot	Q9LEZ3	0.0	BIM1_ARATH; Transcription factor BIM1
TrEMBL	D7M188	0.0	D7M188_ARALL; Uncharacterized protein
STRING	scaffold_600819.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6967	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.4	0.0	bHLH family protein

Link Out ? help Back to Top
Phytozome	908762
Entrez Gene	9307379

Publications ? help Back to Top
Liang T, et al. UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis. Dev. Cell, 2018. 44(4): p. 512-523.e5 [PMID:29398622]