PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 908564 | ||||||||
Common Name | ARALYDRAFT_908564 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | HSF | ||||||||
Protein Properties | Length: 137aa MW: 16008.8 Da PI: 10.6121 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 61.9 | 1.6e-19 | 5 | 94 | 2 | 98 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT.--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkh.snfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 F k++y++++d++l+++isws+++nsf+v++ e ++++vLpk + +++ F+ L+ YgFk++k + + weF h++F +g+ ell k+ 908564 5 FYKNIYNVVDDPSLDQIISWSKSNNSFIVWNLEGLQREVLPKSIEFgKHYLKFMTELKFYGFKRIKGSAQ--------WEFGHEYFVRGQPELLVKMM 94 999***************************************7664256889*************99884........*************9998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 9.0E-19 | 1 | 96 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.5E-22 | 3 | 91 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.99E-19 | 3 | 93 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.9E-19 | 5 | 93 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.0E-6 | 5 | 28 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.0E-6 | 57 | 69 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MLSSFYKNIY NVVDDPSLDQ IISWSKSNNS FIVWNLEGLQ REVLPKSIEF GKHYLKFMTE 60 LKFYGFKRIK GSAQWEFGHE YFVRGQPELL VKMMFKTGMK RIEQLAAIRR AKKKKAKAAK 120 AKAEAEVENR LQQLRI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 908564 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020889898.1 | 8e-73 | heat stress transcription factor A-4a-like | ||||
Refseq | XP_020889899.1 | 8e-73 | heat stress transcription factor A-4a-like | ||||
TrEMBL | D7LZP8 | 6e-95 | D7LZP8_ARALL; Uncharacterized protein | ||||
STRING | scaffold_600621.1 | 1e-95 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3839 | 14 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77570.1 | 2e-27 | Winged helix-turn-helix transcription repressor DNA-binding |
Link Out ? help Back to Top | |
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Phytozome | 908564 |
Entrez Gene | 9307285 |