PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 908364
Common NameARALYDRAFT_908364
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 214aa    MW: 24325 Da    PI: 6.6096
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
908364genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.55.4e-07547344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      WT  Ed+ + +a  +++ g   +W++Ia  +   +++ ++++++
           908364  5 QWTRSEDKMFEQALVLFPEGspnRWERIADQLH--KSAGEVREHY 47
                     7*******************************7..9********9 PP
2Myb_DNA-binding431.1e-1397141347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+ E++l++ + k++G+g+W++I+r +  +Rt+ q+ s+ qky
           908364  97 PWTENEHKLFLIGLKRYGKGDWRSISRNVVVTRTPTQVASHAQKY 141
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512948.431155IPR017930Myb domain
SMARTSM007171.6E-7253IPR001005SANT/Myb domain
SuperFamilySSF466897.77E-12459IPR009057Homeodomain-like
PfamPF002491.4E-5548IPR001005SANT/Myb domain
CDDcd001673.07E-6651No hitNo description
PROSITE profilePS5129418.26190146IPR017930Myb domain
SuperFamilySSF466892.44E-1692147IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-1693145IPR006447Myb domain, plants
SMARTSM007177.0E-994144IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-1096140IPR009057Homeodomain-like
CDDcd001674.25E-897142No hitNo description
PfamPF002491.6E-1197141IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MASSQWTRSE DKMFEQALVL FPEGSPNRWE RIADQLHKSA GEVREHYEAL VHDVFEIDSG  60
RVDVPDYMDD SAAGWDSAGQ ISFGSKHGES ERKRGTPWTE NEHKLFLIGL KRYGKGDWRS  120
ISRNVVVTRT PTQVASHAQK YFLRQNSVKK ERKRSSIHDI TTVDTTLAMP GSTMDWTGQH  180
ESPVQAQPQQ QILSEFGQQL TTPGHFEDFG FRM*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00055PBMTransfer from AT5G04760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap908364
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0883620.0AY088362.1 Arabidopsis thaliana clone 6170 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002873168.11e-159transcription factor DIVARICATA
SwissprotQ8S9H74e-56DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLD7LXM51e-157D7LXM5_ARALL; Uncharacterized protein
STRINGscaffold_600421.11e-158(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51272750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.11e-140MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]