PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 908323
Common NameARALYDRAFT_908323
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 363aa    MW: 39765.2 Da    PI: 8.57
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
908323genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00042150172123
              EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
              y+C+ C+++F++   L  H  +H
   908323 150 YQCKTCDRTFPSFQALGGHRASH 172
              9***********99999998887 PP
2zf-C2H213.10.00028229251123
              EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
              ++C++Cg  F++   L  H+r+H
   908323 229 HECGICGAEFTSGQALGGHMRRH 251
              78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.1E-12149174IPR007087Zinc finger, C2H2
SuperFamilySSF576674.62E-9149172No hitNo description
PROSITE profilePS5015710.471150177IPR007087Zinc finger, C2H2
SMARTSM003550.028150172IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280152172IPR007087Zinc finger, C2H2
SuperFamilySSF576674.62E-9224251No hitNo description
Gene3DG3DSA:3.30.160.607.3E-4227253IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.3E-11228253IPR007087Zinc finger, C2H2
PROSITE profilePS501579.93229253IPR007087Zinc finger, C2H2
SMARTSM003550.047229251IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280231251IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MEAFEEATKE HSLILKGKRT KRQRPQSPIP FSISPPIVSS PERNMEEEFT DLDSKDNALG  60
NHKKDGVITS SSSSASWSSH NNPILKAAED EEDQDIANCL ILLAQGHSLP NNNHHVTNNN  120
SNNNAYRFTS RRFLETSSSN SGGKAGYYVY QCKTCDRTFP SFQALGGHRA SHKKPKAASF  180
YSNLDLKKNI YANDAVSLVH TTTTVYNNNK NNNSRSLVVY GKASNNKVHE CGICGAEFTS  240
GQALGGHMRR HRGAVVVPAA VAPTVTVATA AANTELSLSS MSFDQISDGQ DHLVMPAKKK  300
ARKTVVSLDL DLNLPAPEDE NRVNGFSFAS KQNHEQEHQQ KKQREEPKSL VLSAPTLVDC  360
HY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap908323
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0038850.0BT003885.1 Arabidopsis thaliana clone RAFL15-10-C05 (R20610) putative zinc finger transcription factor (At5g04390) mRNA, complete cds.
GenBankBT0050310.0BT005031.1 Arabidopsis thaliana clone U20610 putative zinc finger transcription factor (At5g04390) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002871091.10.0zinc finger protein ZAT5
TrEMBLD7LXI30.0D7LXI3_ARALL; Zinc finger family protein
STRINGscaffold_600380.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22312775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.11e-177C2H2 family protein