PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 908222
Common NameARALYDRAFT_908222
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 293aa    MW: 31553.7 Da    PI: 7.9611
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
908222genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.00094192214123
              EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
              ++C++C+  Fs+   L  H+r+H
   908222 192 HECSICKAEFSSGQALGGHMRRH 214
              78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.54E-9117140No hitNo description
PfamPF139126.5E-12117142IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.45118145IPR007087Zinc finger, C2H2
SMARTSM003550.041118140IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280120140IPR007087Zinc finger, C2H2
SuperFamilySSF576671.54E-9187214No hitNo description
Gene3DG3DSA:3.30.160.605.6E-4189216IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.5E-12191216IPR007087Zinc finger, C2H2
PROSITE profilePS501579.432192219IPR007087Zinc finger, C2H2
SMARTSM003550.031192214IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280194214IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MTSVLEESGD HARLVLLIKG KRTKRQRSAS PLMMNGAAVS SVCSGERSSV EVKEEEAAGE  60
VEFRGATDED EDMANCLMLL SQGHQAKSSS DDLSMQRMGF FSNKKPVASL GLGLDGVYQC  120
KTCDKSFHSF QALGGHRASH KKPKLGASVF KCDEKKTASA SMIETVEVGA VGSFLSLQVT  180
SNDGTKKPEK THECSICKAE FSSGQALGGH MRRHRGLTIN ANASSTIKTA ISSSSHHHHE  240
ESIRPKNFLQ LDLNLPAPEA ERCCEKPKFA FASKDQILLF AAASNSLIDC HH*
Cis-element ? help Back to Top
SourceLink
PlantRegMap908222
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1627510.0AL162751.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F12E4 (ESSA project).
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002871040.10.0zinc finger protein ZAT5
TrEMBLD7LWQ50.0D7LWQ5_ARALL; Zinc finger family protein
STRINGscaffold_600279.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63472745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.11e-173C2H2 family protein