PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 907776 | ||||||||
Common Name | ARALYDRAFT_907776 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 348aa MW: 38419.6 Da PI: 5.6481 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24 | 6.9e-08 | 158 | 204 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +a+n Er+ R++iN+++ +L++llP++ K + ++L +A+ Y+k+L 907776 158 EANNSPERKQRRDINKKMRTLQDLLPNS-----HKDDNESMLDEAIIYMKNL 204 58999**********************8.....699**************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.83E-8 | 152 | 209 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.6E-10 | 152 | 216 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.49E-12 | 153 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.56 | 155 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.0E-6 | 158 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.6E-5 | 161 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 348 aa Download sequence Send to blast |
MELVFENGQI LAKGRVYNED FMKSIIHGGG GGANKNLGDT QVVPQSHVVP PHETEMLESN 60 RHVDDSTLIE TLKASSSKRM MVDYDNRMKI KFIPPDEQSV VAERMVESGF NTSSAGFTED 120 SEGSMYLSSS LDDESDDARP QVPARTRKAL VKRKRNAEAN NSPERKQRRD INKKMRTLQD 180 LLPNSHKDDN ESMLDEAIIY MKNLKLQVQM MTMGNRFVTP SMMLPLGLHY SQMGLAMGMG 240 MQMDAQQFLP AHVLGAGLPG INDSADMLRF LSHPGLMPMQ NSAPFTPTED CSPQSVPPSC 300 AAFPNQIPNP TSLSNLDGAS PYTRNQGTLT DEGILPGKIL ETREQMK* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 907776 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT033108 | 0.0 | BT033108.1 Arabidopsis thaliana unknown protein (At3g62090) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020881998.1 | 0.0 | LOW QUALITY PROTEIN: transcription factor PIF6 | ||||
Swissprot | Q8L5W7 | 0.0 | PIF6_ARATH; Transcription factor PIF6 | ||||
TrEMBL | D7LST3 | 0.0 | D7LST3_ARALL; Uncharacterized protein | ||||
STRING | scaffold_503480.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13423 | 14 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G62090.1 | 1e-167 | phytochrome interacting factor 3-like 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | 907776 |
Entrez Gene | 9312728 |