PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 907587
Common NameARALYDRAFT_907587
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 300aa    MW: 34056.9 Da    PI: 7.6153
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
907587genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013426123
             EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
             ykC  C ksF +   L  H+r+H
   907587  4 YKCRVCFKSFVNGRALGGHMRSH 26
             9*********************9 PP
2zf-C2H216.23.1e-05184206123
              EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
              ykC+ Cgk+F++   L  H  +H
   907587 184 YKCETCGKVFKSYQALGGHRASH 206
              9************9999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.6E-4326IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.98E-10326No hitNo description
SMARTSM003550.027426IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-6428IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.492436IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576676.98E-10179206No hitNo description
PfamPF139121.7E-11183208IPR007087Zinc finger, C2H2
SMARTSM003550.0071184206IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.427184211IPR007087Zinc finger, C2H2
PROSITE patternPS000280186206IPR007087Zinc finger, C2H2
SMARTSM003550.23235257IPR015880Zinc finger, C2H2-like
PfamPF139125.1E-12235257IPR007087Zinc finger, C2H2
PROSITE profilePS501579.058235257IPR007087Zinc finger, C2H2
PROSITE patternPS000280237257IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MESYKCRVCF KSFVNGRALG GHMRSHMPSL HVDEDEEQRP SQLSDETESD VSSSSSEEKR  60
NGLRENDPKF SVLLEDGESE TESSRNVINL TRKRSKRTRK LDSFVAKKVK TSQLGYKPES  120
DHEPPHSSAS DTTTEEDLAF CLMMLSRDKW KKNKSNKEVV EEIETEEESE GYNKINRITT  180
KGRYKCETCG KVFKSYQALG GHRASHKKNR VSNKTEQRSE TEYDNVVVVA EKRIHECPIC  240
LRVFASGQAL GGHKRSHGIG NLSVNQHHQV HRNESVKQRM IDLNLPAPTE EDDVSVVFQ*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap907587
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1386460.0AL138646.2 Arabidopsis thaliana DNA chromosome 3, BAC clone T8B10.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002876568.10.0zinc finger protein ZAT9
SwissprotQ9M2021e-175ZAT9_ARATH; Zinc finger protein ZAT9
TrEMBLD7LRS30.0D7LRS3_ARALL; Zinc finger family protein
STRINGscaffold_503291.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-155C2H2-like zinc finger protein