PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 906718
Common NameARALYDRAFT_906718
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 274aa    MW: 31165 Da    PI: 4.786
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
906718genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.41.8e-2011100198
             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
             ffkv+   + ++s+ lv+p +f e    +   +kt++l+   g+ W+v l  +k sg++++++GW++F+k+++Lk g+f++F +dg+++f   v+vf+
  906718  11 FFKVF--LSETASDSLVIPLSFNEFLADP--LPKTVKLQGIGGKIWTVSL--EKISGAVYFATGWSKFAKDHELKNGEFMTFVYDGHRTF--EVSVFE 100
             88999..88899999*******9766655..899****************..********************************998877..888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.12E-238100IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.5E-228100IPR015300DNA-binding pseudobarrel domain
CDDcd100171.60E-18999No hitNo description
PROSITE profilePS5086314.1849102IPR003340B3 DNA binding domain
SMARTSM010194.9E-2011102IPR003340B3 DNA binding domain
PfamPF023629.6E-1811100IPR003340B3 DNA binding domain
SuperFamilySSF1019361.24E-7174266IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.7E-4176265IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MADNSDLYPR FFKVFLSETA SDSLVIPLSF NEFLADPLPK TVKLQGIGGK IWTVSLEKIS  60
GAVYFATGWS KFAKDHELKN GEFMTFVYDG HRTFEVSVFE RFGFKETRAE IQAIQLSDSH  120
SDSVVEEEED SSDVDDGSCG EDEEISQSLY PIDDEETKTD AAVFEGNLDI EALTNPHFPT  180
RLKNRIYELL IPANVVNDNK LKFGDSIKYI DGEGTLIGLK GKWADKRICF KGWDRICRRN  240
RLKKHQDTVE CELLHDDQKM VHSIRVHVLR RTD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A5e-21199399At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap906718
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936471e-156AB493647.1 Arabidopsis thaliana At3g53310 mRNA for hypothetical protein, partial cds, clone: RAAt3g53310.
GenBankAY0875861e-156AY087586.1 Arabidopsis thaliana clone 36830 mRNA, complete sequence.
GenBankBT0257241e-156BT025724.1 Arabidopsis thaliana At3g53310 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002877911.10.0B3 domain-containing protein REM20
SwissprotQ8LAV51e-157REM20_ARATH; B3 domain-containing protein REM20
TrEMBLD7LUG90.0D7LUG9_ARALL; Uncharacterized protein
STRINGscaffold_502422.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.11e-151B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]