PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 906088 | ||||||||
Common Name | ARALYDRAFT_906088 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C3H | ||||||||
Protein Properties | Length: 448aa MW: 49576.6 Da PI: 4.8997 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 42 | 1.5e-13 | 113 | 136 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 e C+f++rtG Ck+G++CkF+H+ 906088 113 AEDCSFYMRTGSCKFGSSCKFNHP 136 689********************9 PP | |||||||
2 | zf-CCCH | 32.6 | 1.4e-10 | 163 | 183 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 C++++rtG CkyG++C+F+H 906088 163 DCKYYFRTGGCKYGETCRFNH 183 5******************** PP | |||||||
3 | zf-CCCH | 40.2 | 5.6e-13 | 205 | 230 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++r+G Ck+G+ CkF+H+ 906088 205 PGEVECPYYMRNGSCKFGAECKFNHP 230 5789*********************9 PP | |||||||
4 | zf-CCCH | 21.7 | 3.6e-07 | 347 | 372 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++++tG Ck+ +Ck++H++ 906088 347 DQPDCSYYMKTGDCKFKFNCKYHHPK 372 6899********************96 PP | |||||||
5 | zf-CCCH | 35 | 2.4e-11 | 394 | 417 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C +++r+G+Ck+G+ C+F H+ 906088 394 QNICTYYSRYGICKFGPACRFDHS 417 679********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.4E-7 | 110 | 137 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.263 | 110 | 138 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.06E-6 | 111 | 137 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.1E-11 | 113 | 136 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.4E-5 | 116 | 135 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.7E-4 | 158 | 185 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.46 | 158 | 186 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-8 | 163 | 183 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-5 | 163 | 186 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.6E-5 | 164 | 184 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.0E-7 | 204 | 231 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.516 | 204 | 232 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-10 | 206 | 230 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-5 | 208 | 231 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-4 | 210 | 229 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.086 | 345 | 372 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.15 | 345 | 373 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-4 | 347 | 372 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.71E-5 | 349 | 375 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.36E-6 | 389 | 417 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.511 | 391 | 419 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.8E-5 | 391 | 418 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-8 | 394 | 417 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 396 | 418 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 448 aa Download sequence Send to blast |
MVNSEETADG FEPKPVSQSY SGDSSADRSL SDLNNAAEDL SDKLKNVGLD EVTKEKSETI 60 VSVSESNGGL DSNVVVTSNQ EEEEEEDGDD YGDGWSENES EMRETVYPVR PGAEDCSFYM 120 RTGSCKFGSS CKFNHPLARK IQIARDNKVR EKEEDGGKLG LIDCKYYFRT GGCKYGETCR 180 FNHTLPKSCL ASAPELNFLG LPIRPGEVEC PYYMRNGSCK FGAECKFNHP DPTTIGGTDS 240 LSFHGNNGVS IGTFSPKSAF QASSTSWTSP RHVNGTSPFI PVMLSQTHGV PSQTPEWNGY 300 QASVYSSERG LFSPSTTYLM NNLSAETSML SQYRHQMPAE EFPERPDQPD CSYYMKTGDC 360 KFKFNCKYHH PKNRLPKLPP YALNDKGLPL RPDQNICTYY SRYGICKFGP ACRFDHSVQP 420 PYSTESSQAI VEPPQVSANG NESDGWN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 906088 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT033139 | 0.0 | BT033139.1 Arabidopsis thaliana unknown protein (At3g48440) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002875904.1 | 0.0 | zinc finger CCCH domain-containing protein 43 isoform X2 | ||||
Swissprot | Q9STM4 | 0.0 | C3H43_ARATH; Zinc finger CCCH domain-containing protein 43 | ||||
TrEMBL | D7LRW7 | 0.0 | D7LRW7_ARALL; Zinc finger (CCCH-type) family protein | ||||
STRING | scaffold_501792.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4176 | 27 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 0.0 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | 906088 |
Entrez Gene | 9311972 |
Publications ? help Back to Top | |||
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