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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
905682 |
Common Name | ARALYDRAFT_905682 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
C2H2 |
Protein Properties |
Length: 451aa MW: 50431.5 Da PI: 10.0202 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
905682 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 19.8 | 2.1e-06 | 68 | 90 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C++C+k F+r nL+ H r H
905682 68 FICEICNKGFKRDQNLQLHRRGH 90
89*******************88 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 451 aa
Download sequence Send
to blast |
MMMPDDHHHL SFPSYVLHQE HITPNPNPNP NPTSSNSAKR KRNLPGNPDP DAEVIALSPN 60 SLMATNRFIC EICNKGFKRD QNLQLHRRGH NLPWKLKQRT NKEQVKKKVY ICPEKSCVHH 120 DPARALGDLT GIKKHFSRKH GEKKWKCDKC SKKYAVMSDW KAHSKICGTR EYRCDCGTLF 180 SRKDSFITHR AFCDALAEEN ARFVSVPPAP AAPAPAYLNN PLDGEVNLGN INQNHQQRQV 240 NTTSSQLDQP GFNIHRNNIA FLGQTLPTNV FASSSSPSPR SASDSLQNLW HLQGQSSHQW 300 LLNENKNNNI LQRGISKNQE EREIKNVISN GSLFSTEARN NTNNYNQDCG HIASMSATAL 360 LQKAAQMGSK RSSSSSSNNS KTFGLMTSIF NNKQGENIKT KEVDERGFTR DFLGVGSQHR 420 PWPLLMVNHN LPNSSPSATI DGTPTADRNQ *
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that, together with JKD, regulates tissue boundaries and asymmetric cell division in roots by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action (PubMed:25829440). Confines CYCD6 expression to the cortex-endodermis initial/daughter (CEI/CEID) tissues (PubMed:25829440). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AF428302 | 0.0 | AF428302.1 Arabidopsis thaliana AT3g45260/F18N11_20 mRNA, complete cds. |
GenBank | AJ621493 | 0.0 | AJ621493.1 Arabidopsis thaliana mRNA for ID1-like zinc finger protein 1 (idz1 gene). |
GenBank | AY143936 | 0.0 | AY143936.1 Arabidopsis thaliana At3g45260/F18N11_20 mRNA, complete cds. |