PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 905167
Common NameARALYDRAFT_905167
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 93aa    MW: 10649 Da    PI: 8.5172
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
905167genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.83.4e-0722591854
            HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
     HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksL 54
            +  ++Lr+ lP+ + + +s K+s + +L+++++YI++L
  905167 22 DLVSKLRQFLPEiQERRRSDKVSASKVLQETCNYIRKL 59
            66689*******999*********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.017459IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-71974IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-42259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-72277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MSNRRSRQSS SASRISDDQM IDLVSKLRQF LPEIQERRRS DKVSASKVLQ ETCNYIRKLH  60
REVDNLSDRL SQLLDSVDED SPEAAVIRSL LM*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap905167
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0246401e-133BT024640.1 Arabidopsis thaliana unknown protein (At3g28857) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002877136.16e-58transcription factor PRE5
RefseqXP_020882587.16e-58transcription factor PRE5
RefseqXP_020882588.16e-58transcription factor PRE5
SwissprotQ9LJX11e-57PRE5_ARATH; Transcription factor PRE5
TrEMBLD7LM501e-56D7LM50_ARALL; Transcription regulator
STRINGscaffold_500871.12e-57(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25928225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.11e-49bHLH family protein