PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 902954
Common NameARALYDRAFT_902954
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 307aa    MW: 34450.4 Da    PI: 9.2704
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
902954genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.8e-053961123
             EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
             y+C+ C + F++   L  H+++H
   902954 39 YTCSFCRREFKSAQALGGHMNVH 61
             9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.66E-63665No hitNo description
SMARTSM003550.00523961IPR015880Zinc finger, C2H2-like
PfamPF139122.5E-53962IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.1573966IPR007087Zinc finger, C2H2
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MEKPGGFWIP KTSNKESSWE ELAFAEDDAA GSLWPPRSYT CSFCRREFKS AQALGGHMNV  60
HRRDRARLKQ ADDQYLFPKY PSSPEYPSHK DNDNIHETSS YTLVFNSKPN YFKTQHSCVI  120
DLSSSSSLPY LTPSRVSSGS PGKQKTSSSS PPYFVVEPSK NSKKIPSSSP WSFPSTFVEQ  180
KRCDLYEIPA TEGEKKRKTE SDVPKIGHKA KISLGNTTDL SVSMNLVIHQ SFPITAHGSD  240
EEIGRGDIRK RRRRRHESPS QQSVLISSLS CKSDIITRNE ESKHKGDRLE DLDLELRLGI  300
DPPKGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A6e-133461229superman protein
2l1o_A6e-133461229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1248252RKRRR
2248254RKRRRRR
3249254KRRRRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may regulate cell division and growth. {ECO:0000269|PubMed:12154136}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap902954
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0046840.0AC004684.3 Arabidopsis thaliana chromosome 2 clone F13M22 map ve018, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002881549.10.0zinc finger protein 10
SwissprotO809420.0ZFP10_ARATH; Zinc finger protein 10
TrEMBLD7LKF90.0D7LKF9_ARALL; Zinc finger family protein
STRINGscaffold_402455.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110472534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.11e-168zinc-finger protein 10