PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 902763 | ||||||||
Common Name | ARALYDRAFT_902763 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 185aa MW: 19849.2 Da PI: 4.7175 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.4 | 8.7e-19 | 14 | 64 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ykGVr++k++++Wv+eIr+p+ + r++lg+f t+e+Aa a++ a+++l+g 902763 14 LYKGVRQRKNSNKWVSEIREPR----KpNRIWLGTFSTPEMAAIAYDVAALALKG 64 69******************94....478***********************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.0E-12 | 13 | 64 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.67E-29 | 13 | 74 | No hit | No description |
SMART | SM00380 | 6.9E-32 | 14 | 78 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.206 | 14 | 72 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.48E-20 | 14 | 74 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.8E-28 | 14 | 73 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.0E-8 | 15 | 26 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.0E-8 | 54 | 74 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 185 aa Download sequence Send to blast |
MQGTSKDNGG RHPLYKGVRQ RKNSNKWVSE IREPRKPNRI WLGTFSTPEM AAIAYDVAAL 60 ALKGSQAELN FPNSVSSLPA PTSMSPGDIQ AACASAAAAF GAARDSIVMA NNNSQTSSVA 120 RMNGSYDNTN MNGFMDEDLV FDMPNVLMNM AEGMLLSPPR PPAFDAAYEA DGFTGADDYL 180 WNFP* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-14 | 10 | 77 | 3 | 68 | ATERF1 |
3gcc_A | 3e-14 | 10 | 77 | 3 | 68 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 902763 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC006919 | 0.0 | AC006919.6 Arabidopsis thaliana chromosome 2 clone F1O11 map g6825, complete sequence. | |||
GenBank | AY560867 | 0.0 | AY560867.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At2g36450) mRNA, complete cds. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. | |||
GenBank | DQ446604 | 0.0 | DQ446604.1 Arabidopsis thaliana clone pENTR221-At2g36450 AP2 domain-containing protein (At2g36450) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020884245.1 | 1e-134 | ethylene-responsive transcription factor ERF024 | ||||
Swissprot | Q9SJR0 | 1e-110 | ERF24_ARATH; Ethylene-responsive transcription factor ERF024 | ||||
TrEMBL | D7LJ39 | 1e-133 | D7LJ39_ARALL; AP2 domain-containing protein | ||||
STRING | scaffold_402264.1 | 1e-133 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6424 | 25 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G36450.1 | 1e-101 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | 902763 |
Entrez Gene | 9315681 |