PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

902758

Common Name

ARALYDRAFT_482627

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

C2H2

Protein Properties

Length: 329aa MW: 34945.3 Da PI: 4.9248

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
902758	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.9	0.00069	267	287	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cg + ++k++L rH+ +H 902758 267 CTSCGVRLKQKEELDRHMELH 287 ******************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.868	265	292	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	267	287	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MLEEDDSVRI PSSSSQFKNT NMRELPDASQ VEIFDSKLAA ENAPGLTIAS EATGQPNMSD 60 LLEAVMKSGI LSNNSTHGAI KEEISQDEVN PGALTLSAAS KPKNLPSALP ISLAGDNLLA 120 RLKVEQSSAP LVSCAASLTG ITSVQTSKEN SKASDPLSCL LSSLVSKGLI SASKTEQPSA 180 PSITQEYSPD HSTNSSMSVS VVPSDAQPSV LVKKGPSTAP KVKGLTASET SKSEPEDLIG 240 LKFRADKIRE LHPSVISSLF DDLPHLCTSC GVRLKQKEEL DRHMELHDKS KGELSGKNSK 300 CRVWFPKVEN WIAAKAGELE PEDEEVLN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	902758

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC006919	0.0	AC006919.6 Arabidopsis thaliana chromosome 2 clone F1O11 map g6825, complete sequence.
GenBank	AK226757	0.0	AK226757.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-77-O21.
GenBank	CP002685	0.0	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020884739.1	0.0	polyadenylation and cleavage factor homolog 4-like
TrEMBL	D7LJ42	0.0	D7LJ42_ARALL; Zinc finger (C2H2-type) family protein
STRING	scaffold_402259.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6423	3	3

Link Out ? help Back to Top
Phytozome	902758
Entrez Gene	9317513