PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 901783
Common NameARALYDRAFT_901783
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HSF
Protein Properties Length: 69aa    MW: 7778.8 Da    PI: 7.6837
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
901783genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind46.51e-141865350
                  HHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--H CS
  HSF_DNA-bind  3 lkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnf 50
                  l ++ye+++d++++ +isws++g+sf+v++++ef+k++Lp+ F h++f
        901783 18 LDRTYEVVDDPSTDAIISWSQSGKSFIVWNPSEFSKDLLPRCFGHHHF 65
                  6789*****************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.6E-41067IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.44E-131665IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.7E-151665IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.2E-61740IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.7E-111965IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-65567IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 69 aa     Download sequence    Send to blast
MVKTKSSVAL RRAFVTHLDR TYEVVDDPST DAIISWSQSG KSFIVWNPSE FSKDLLPRCF  60
GHHHFLDA*
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap901783
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002870105.12e-34heat stress transcription factor A-4a
SwissprotQ401523e-16HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBLD7LJJ54e-43D7LJJ5_ARALL; Uncharacterized protein
STRINGscaffold_401284.16e-44(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132311127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18870.12e-18HSF family protein
Publications ? help Back to Top
  1. Zhu B, et al.
    Identification and characterization of a novel heat shock transcription factor gene, GmHsfA1, in soybeans (Glycine max).
    J. Plant Res., 2006. 119(3): p. 247-56
    [PMID:16570125]
  2. Cai SY, et al.
    HsfA1a upregulates melatonin biosynthesis to confer cadmium tolerance in tomato plants.
    J. Pineal Res., 2017.
    [PMID:28095626]
  3. Zhou J, et al.
    Heat Shock Factor HsfA1a Is Essential for R Gene-Mediated Nematode Resistance and Triggers H2O2 Production1.
    Plant Physiol., 2018. 176(3): p. 2456-2471
    [PMID:29339397]