PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 901675
Common NameARALYDRAFT_901675
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GATA
Protein Properties Length: 321aa    MW: 35574.9 Da    PI: 8.2195
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
901675genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.84e-20214248135
    GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
             C++C tt+Tp+WR+gp+g+ktLCnaCG+++r+ +l
  901675 214 CTHCETTNTPQWREGPSGPKTLCNACGVRFRSGRL 248
             *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.7E-19208258IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.28E-14210269No hitNo description
PROSITE profilePS5011412.057212244IPR000679Zinc finger, GATA-type
CDDcd002021.22E-16213262No hitNo description
Gene3DG3DSA:3.30.50.102.6E-15213245IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440214239IPR000679Zinc finger, GATA-type
PfamPF003207.4E-18214248IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MSNGSWLPEE DFKGLSDNFF DNLIDPNDDF SLEDIETADD EGDWDAGFQN LVPPPLDVLT  60
SLSSEFSCNG QRVPVQKPVP SLKQSCSSEV STVDNSPSDV KVSKLFQSSS PVSVLENTNG  120
SVSSLNLHRA LKLAFPLKGI RSKRKRPTLL RVTFLQAFGF EMSQQFAPDE SESEINLSSE  180
ISANKKRKRN KSRPTHQVHN TPKPFNSGGR VQKCTHCETT NTPQWREGPS GPKTLCNACG  240
VRFRSGRLVP EYRPASSPTF IPTVHSNMHR KIIQMRSKDE GQFDTRKIRA VTSGAETKPG  300
LCNFGRPMSL VNEKQNCEDL *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap901675
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002880933.10.0putative GATA transcription factor 13
RefseqXP_020884840.10.0putative GATA transcription factor 13
SwissprotQ9SKN61e-142GAT13_ARATH; Putative GATA transcription factor 13
TrEMBLD7LHN70.0D7LHN7_ARALL; Uncharacterized protein
STRINGscaffold_401176.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16812589
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28340.11e-140GATA transcription factor 13