PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 901447
Common NameARALYDRAFT_901447
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 536aa    MW: 60732.6 Da    PI: 8.9006
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
901447genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.76.8e-16691196
            EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
      B3  1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
            ffk l     + s+ l++p  f+ ++  g +  e+kt  l++  s+++W+vk+  ++++    lt+GW++F+ a++L+ gD++vF+ +++++f  +v++
  901447  6 FFKPL--LPGFHSH-LTIPVAFFFKNieGRN--EQKTAELRSdASNKTWKVKI--DGQR----LTNGWRDFALAHDLRIGDIIVFRQERDMTF--HVTM 91
            66666..5667777.*******999974444..5568888876999*******..9888....***********************7666777..7765 PP
2B371.41.2e-22131216390
             EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
      B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
              + +++++l+ + l lp  f++++g++++++ +++l +e+grsW+v l+ +k+  ++++++GW++F++angL++g f++Fkl++r ++
  901447 131 VANVTPSNLRYDSLNLPMCFVRANGLDNRCG-EMILINEKGRSWTVALKRKKSCATTYIRRGWRNFCNANGLRAGSFFTFKLIER-GG 216
             56789999*******************9887.****************87777777**************************986.33 PP
3B333.29e-112773344299
             TS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
      B3  42 sgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
             +++ W+ +l ++ k +r+ l++GWkeF+ ang+k g+++++++ ++ +++ v+k+++k
  901447 277 QSKLWSTNLWFEEKCKRMRLSGGWKEFCYANGVKIGESIILEFLWEADRSSVLKFCSK 334
             5699*****8899999***************************999888899999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.731395IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.1E-233108IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.88E-203101IPR015300DNA-binding pseudobarrel domain
CDDcd100179.86E-16592No hitNo description
SMARTSM010193.5E-22695IPR003340B3 DNA binding domain
PfamPF023628.2E-111489IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.9E-22123215IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.2E-20127224IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.58129226IPR003340B3 DNA binding domain
CDDcd100171.94E-22129222No hitNo description
SMARTSM010194.2E-25130226IPR003340B3 DNA binding domain
PfamPF023621.2E-20131217IPR003340B3 DNA binding domain
CDDcd100175.37E-9256332No hitNo description
SuperFamilySSF1019361.29E-10259333IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.012265335IPR003340B3 DNA binding domain
PROSITE profilePS508639.601267335IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-8276333IPR015300DNA-binding pseudobarrel domain
PfamPF023626.9E-9277334IPR003340B3 DNA binding domain
PfamPF034782.3E-5444497IPR005174Domain unknown function DUF295
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MANQHFFKPL LPGFHSHLTI PVAFFFKNIE GRNEQKTAEL RSDASNKTWK VKIDGQRLTN  60
GWRDFALAHD LRIGDIIVFR QERDMTFHVT MLGPSCCEIQ YVSCLDNQNN RGTIQRKKKK  120
AESSLDLSCF VANVTPSNLR YDSLNLPMCF VRANGLDNRC GEMILINEKG RSWTVALKRK  180
KSCATTYIRR GWRNFCNANG LRAGSFFTFK LIERGGTLGL RLAHRELEEE GNAIDNNQDK  240
RSSRECTKKK ILIWKASSLP SQNRFVTVTL TPYNVGQSKL WSTNLWFEEK CKRMRLSGGW  300
KEFCYANGVK IGESIILEFL WEADRSSVLK FCSKDPRVFN TDEMRWMLLE KPSYASCSDL  360
ITFRGRFYAA FFNHGIFAID PYSLEVTPLI PSELLNSGSV NDLVPSGNDA LFLVEKIIPR  420
TGVLYFSRLT LRVSMLDEEA GKWVEVSEIG DRLLVIGDLG NVCCSAKELP DGCGLSGNSI  480
VFTHGPGNVT YSYKYGVHTG REEDDLNCWR YSREKPVTIL STSPVVALRV ESAKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMap901447
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0072662e-91AC007266.5 Arabidopsis thaliana chromosome 2 clone F27A10 map mi238, complete sequence.
GenBankCP0026852e-91CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010466695.21e-179PREDICTED: LOW QUALITY PROTEIN: B3 domain-containing protein REM14
SwissprotQ8GYM41e-109REM14_ARATH; B3 domain-containing protein REM14
TrEMBLD7LE940.0D7LE94_ARALL; Uncharacterized protein
STRINGscaffold_400948.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.11e-111B3 family protein