PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 901324
Common NameARALYDRAFT_901324
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 334aa    MW: 38645.4 Da    PI: 10.407
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
901324genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.44.5e-1225734096
            ETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
      B3 40 desgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
            d s ++W+vk+  ++++    lt+GW eF+ a++L+ gD++vF+ +++++f  +v++
  901324 25 DASKKTWKVKI--DGQR----LTNGWTEFALAHDLRIGDIIVFRQERSMTF--HVTM 73
            5889*******..8888....***********************5555666..7765 PP
2B351.12.4e-161411904090
             ETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
      B3  40 desgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
             +++grsW+v l+ +k+ g++++++GW++F++angL++g f++Fkl++r ++
  901324 141 QRKGRSWTVALKRKKSCGTTYIRRGWRSFCHANGLRAGSFFTFKLIER-GG 190
             579********98999999**************************986.33 PP
3B359.84.8e-19232327299
             EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
      B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
             + v+ ++++  ++ l+lp +f++ ++++k++  ++++ d++g +W+ +l ++ k +r+ l++GWkeF+ an++k g++++++l+++++++ v+k+++k
  901324 232 VRVTPTPYNVGQSKLILPVPFTKVNDIIKAK--KMSFLDKHGVKWSTNLWFEEKCKRMRLSGGWKEFCYANDVKIGESIILELIWETDRSSVLKFCSK 327
             56666788888889********999999665..8***************8899999******************************999999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.702177IPR003340B3 DNA binding domain
SuperFamilySSF1019369.22E-14583IPR015300DNA-binding pseudobarrel domain
CDDcd100171.85E-8574No hitNo description
SMARTSM010197.4E-12677IPR003340B3 DNA binding domain
PfamPF023621.7E-72570IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-182590IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-13110196IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.2E-9112200IPR003340B3 DNA binding domain
PROSITE profilePS5086312.844140200IPR003340B3 DNA binding domain
PfamPF023621.7E-14141191IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-12141189IPR015300DNA-binding pseudobarrel domain
CDDcd100172.22E-13144196No hitNo description
Gene3DG3DSA:2.40.330.107.5E-20223327IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.04E-19227326IPR015300DNA-binding pseudobarrel domain
CDDcd100174.11E-17230325No hitNo description
PfamPF023622.4E-18231327IPR003340B3 DNA binding domain
PROSITE profilePS5086313.126231327IPR003340B3 DNA binding domain
SMARTSM010199.0E-18231328IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MVNQHFFKPL LPGFHSHLTA ELRSDASKKT WKVKIDGQRL TNGWTEFALA HDLRIGDIIV  60
FRQERSMTFH VTMLGPSCYE IQYVSCLDNQ NNLGKIQRKK KEAESSLDLS CFIANVTPSN  120
LRYDSLDKWS RQKMWRYDSD QRKGRSWTVA LKRKKSCGTT YIRRGWRSFC HANGLRAGSF  180
FTFKLIERGG TLGLRLSHRE LDEEANAIDN NQDERSSRHV KASSLPPQNR FVRVTPTPYN  240
VGQSKLILPV PFTKVNDIIK AKKMSFLDKH GVKWSTNLWF EEKCKRMRLS GGWKEFCYAN  300
DVKIGESIIL ELIWETDRSS VLKFCSKVKP ENK*
Cis-element ? help Back to Top
SourceLink
PlantRegMap901324
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0072661e-82AC007266.5 Arabidopsis thaliana chromosome 2 clone F27A10 map mi238, complete sequence.
GenBankCP0026851e-82CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010467375.11e-165PREDICTED: B3 domain-containing protein REM14-like
SwissprotQ8GYM42e-90REM14_ARATH; B3 domain-containing protein REM14
TrEMBLD7LCR30.0D7LCR3_ARALL; Uncharacterized protein
STRINGscaffold_400825.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.19e-93B3 family protein