PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 900861
Common NameARALYDRAFT_900861
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family TALE
Protein Properties Length: 615aa    MW: 68018.7 Da    PI: 6.9251
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
900861genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.99.8e-104324691954
               HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
  Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
               Fe   n+yps +++  LA+++gL+ +qV++WF N R +
    900861 432 FEHflNPYPSDADKHLLARQTGLSRNQVSNWFINARVR 469
               665569******************************88 PP
2BELL123.77.2e-40290361172
    BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
             +r e+q++k+kLls+leeVd+rY++y+eq+q+v++sF++v+g+g+a pYt+lA+ka+SrhFrcLkda+a q+
  900861 290 DRIEHQRRKVKLLSMLEEVDRRYNHYCEQMQMVVNSFDQVMGYGAAVPYTTLAQKAMSRHFRCLKDAVAVQL 361
             589******************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.5E-88220359IPR006563POX domain
PfamPF075263.9E-52226358IPR006563POX domain
PROSITE profilePS5007112.86410473IPR001356Homeobox domain
CDDcd000861.21E-12413474No hitNo description
SMARTSM003891.1E-9413477IPR001356Homeobox domain
SuperFamilySSF466891.2E-17414480IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-28416479IPR009057Homeodomain-like
PfamPF059202.7E-18430469IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MSQDYHHHQG IFSFSNGFHR ASSTTHQEEV DESAVSGAQI PVYETAGMLS EMFAYPGGGG  60
GGSGGEILDQ STKQLLEQQN RHNNSTLHML LPNHHHQQGF AFTDENTMQP QQQQHHFSWP  120
SSSDHHHNRD MIGTVHVEGG KGLSLSLSSS LAAAKAEEYR SIYCAAVDGT SSSSNASAHH  180
HQFNQFKNLL LENSSSHHHH QVVGHFGSSS SSPMAASSST GGIYTLRNSK YTKPAQELLE  240
EFCSVGRGHF KKNKLSRNNS NPNTTGGGGG GGSSSSAGTA NDNPPLSPAD RIEHQRRKVK  300
LLSMLEEVDR RYNHYCEQMQ MVVNSFDQVM GYGAAVPYTT LAQKAMSRHF RCLKDAVAVQ  360
LKRSCELLGD KEAGGAASSG LTKGETPRLR LLEQSLRQQR AFHHMGMMEQ EAWRPQRGLP  420
ERSVNILRAW LFEHFLNPYP SDADKHLLAR QTGLSRNQVS NWFINARVRL WKPMVEEMYQ  480
QEAKEREEEA EENENQQQRR QQQTNNNDTK PNNNENNFTV ITAQTPTTMT STHHENDSSF  540
LSSVAAASHG GSDAFTVATC QQDVSDFHVD GDGVNVIRFG TKQTGDVSLT LGLRHSGNIP  600
DKNTSFSVRD FGDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A1e-15419477563Homeobox protein Meis2
4xrm_B1e-15419477563Homeobox protein Meis2
4xrs_A7e-16419476158Homeobox protein Meis1
4xrs_B7e-16419476158Homeobox protein Meis1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269|PubMed:17873098}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap900861
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3530920.0AF353092.1 Arabidopsis thaliana BEL1-like homeobox 4 (BLH4) mRNA, complete cds.
GenBankAY0581790.0AY058179.1 Arabidopsis thaliana At2g23760/F27L4.6 mRNA, complete cds.
GenBankAY1420190.0AY142019.1 Arabidopsis thaliana At2g23760/F27L4.6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002880524.20.0BEL1-like homeodomain protein 4
RefseqXP_020884159.10.0BEL1-like homeodomain protein 4
SwissprotQ94KL50.0BLH4_ARATH; BEL1-like homeodomain protein 4
TrEMBLD7LG220.0D7LG22_ARALL; Uncharacterized protein
STRINGscaffold_400362.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21662466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23760.30.0BEL1-like homeodomain 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]