PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 900671
Common NameARALYDRAFT_900671
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 318aa    MW: 35647.3 Da    PI: 9.5996
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
900671genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.73.9e-2071119355
     AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
             y+GVr+++ +g+WvAeIr p++   r+r +lg+f taeeAa a+++a+ +l+g
  900671  71 YRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFETAEEAAMAYDQAAFQLRG 119
             9******9.**********965...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.78770127IPR001471AP2/ERF domain
SMARTSM003801.5E-3770133IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-2270127IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.6E-3270128IPR001471AP2/ERF domain
CDDcd000188.54E-3271128No hitNo description
PRINTSPR003673.2E-117182IPR001471AP2/ERF domain
PfamPF008472.9E-1471119IPR001471AP2/ERF domain
PRINTSPR003673.2E-1193109IPR001471AP2/ERF domain
SuperFamilySSF515692.09E-13237316No hitNo description
Gene3DG3DSA:3.20.20.702.2E-16237302IPR013785Aldolase-type TIM barrel
PfamPF002742.7E-16244316IPR000741Fructose-bisphosphate aldolase, class-I
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006096Biological Processglycolytic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004332Molecular Functionfructose-bisphosphate aldolase activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
METASLPFPV PNTSFGLNQP KPLGLNQLTP YQIHQIQNQL NHRRSTTSKL SPKPIRMKNL  60
SPSSSKTKNL YRGVRQRHWG KWVAEIRLPK NRTRLWLGTF ETAEEAAMAY DQAAFQLRGD  120
ITKLNFPNIR HEDINPLPSS VDAKLQAICK SLRKTEEKYS VSGKTEHVLP KTELFLPKTE  180
RLETKEFFDE SPKSDENSSQ AGYSSSDITL LDFSDSEFEE IGSFGLVKFP SVEIDWDAIS  240
KLDSVTTSPS PRSLSFLFRR ALQQSTLKTW AGIEENVKAA QEALYMRCKA NSEATLGTYK  300
GDAKLVDGAA GSLHVKH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2071127360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap900671
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0071680.0AC007168.5 Arabidopsis thaliana chromosome 2 clone T26C19 map mi238, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020884845.11e-180ethylene-responsive transcription factor ERF056
SwissprotQ9SIE41e-145ERF56_ARATH; Ethylene-responsive transcription factor ERF056
TrEMBLD7LDD80.0D7LDD8_ARALL; Uncharacterized protein
STRINGscaffold_400172.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26802768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22200.11e-137ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]