PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 900468 | ||||||||
Common Name | ARALYDRAFT_900468 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ERF | ||||||||
Protein Properties | Length: 328aa MW: 37308.7 Da PI: 8.2361 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.7 | 1.7e-19 | 177 | 227 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++ + kl+ge 900468 177 LYRGVRQRH-WGKWVAEIRKPRN---RTRLWLGTFDTAEEAAMAYDREAFKLRGE 227 59******9.**********954...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.25E-34 | 176 | 236 | No hit | No description |
SuperFamily | SSF54171 | 1.57E-23 | 177 | 235 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.8E-41 | 177 | 240 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-32 | 177 | 235 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.235 | 177 | 234 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-11 | 178 | 189 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.2E-14 | 178 | 227 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-11 | 200 | 216 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:2000070 | Biological Process | regulation of response to water deprivation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MATAKNKGKS IRSLGTNESE KMDEEFQFSS GKYKDSGSGS DMWLGEASST SQRGLRKTRT 60 FDRHNPYLLQ PPPTTKCPVS SSSVAFPFSL APAIQNQQRF LHPNDPSGQR QQQMISFGPQ 120 LQVQPYLVQQ QQHMLQYWRD ILKLSPSGRM MMMNMLRQES DLPLTRPPIQ PFSATKLYRG 180 VRQRHWGKWV AEIRKPRNRT RLWLGTFDTA EEAAMAYDRE AFKLRGETAR LNFPELFLNK 240 QESTPVHQKQ CETATTSEEA SGRREDDSSA ALAVGRVSEE TGWAEAWFNA IPEEWGPGSP 300 LWDDYHFPIS NHKDDHDPPQ NSSSDTI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 6e-20 | 176 | 234 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 8e-20 | 176 | 234 | 4 | 63 | ATERF1 |
3gcc_A | 8e-20 | 176 | 234 | 4 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in abiotic stress tolerance. Can directly regulate stress-related gene expression by binding to the DNA sequence 5'-[AG]CCGAC-3' (DRE element) of their promoter region. Involved in the regulation of stomatal closure movement under drought stress (PubMed:23625358). Acts as a positive regulator of drought stress response (PubMed:22095047). {ECO:0000269|PubMed:22095047, ECO:0000269|PubMed:23625358}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 900468 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress (PubMed:18550687, PubMed:22095047, PubMed:23625358). Induced by salt stress (PubMed:22095047). Induced by abscisic acid (ABA) and heat stress (PubMed:23625358). {ECO:0000269|PubMed:18550687, ECO:0000269|PubMed:22095047, ECO:0000269|PubMed:23625358}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC006234 | 0.0 | AC006234.4 Arabidopsis thaliana chromosome 2 clone F5H14 map mi148, complete sequence. | |||
GenBank | AY062843 | 0.0 | AY062843.1 Arabidopsis thaliana AP2 domain transcription factor (At2g20880; F5H14.15) mRNA, complete cds. | |||
GenBank | AY081659 | 0.0 | AY081659.1 Arabidopsis thaliana AP2 domain transcription factor (At2g20880) mRNA, complete cds. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002884229.1 | 0.0 | ethylene-responsive transcription factor ERF053 | ||||
Swissprot | Q9SKT1 | 0.0 | ERF53_ARATH; Ethylene-responsive transcription factor ERF053 | ||||
TrEMBL | D7L5C0 | 0.0 | D7L5C0_ARALL; Uncharacterized protein | ||||
STRING | scaffold_304438.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2141 | 27 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20880.1 | 1e-173 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | 900468 |
Entrez Gene | 9322380 |
Publications ? help Back to Top | |||
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