PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 900233 | ||||||||
Common Name | ARALYDRAFT_900233 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C2H2 | ||||||||
Protein Properties | Length: 334aa MW: 38615.9 Da PI: 8.6163 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.2 | 3.3e-06 | 248 | 270 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp+C+ +F+++ ++ H+++H 900233 248 YTCPKCNGVFNTSQQFAAHMSSH 270 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.002 | 248 | 270 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.349 | 248 | 275 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 250 | 270 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MSSIPNRLYI YGDDSTNHHD FFPIEMNHNS KMVRSMFTAY DCSNHSDLFS SSPSISCYQN 60 SHVSSSSFGF NNSHMPNHMM RRNIDYVSGT DYFPIKDNPH LTRVSFTQTI TNRYSSIAPA 120 NTLDAVQYDI ERVKRAMDSK PNIWNPTLHS PNFLDKQCQI LTPEPLNVIF PRQNSVDRQH 180 LNFFSLSSKH NHDQNICHEG RSLEKVSKPT TFSKKTNDYI HCEKNEKIDD DQYDGRTHSL 240 PYEKYGPYTC PKCNGVFNTS QQFAAHMSSH YKGETNKERD QRLRARNKRK YRKLNPEVYG 300 ESQKIKPEDG VNRGRRSDGE IIQNLGIVKE EIV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 900233 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002884137.1 | 0.0 | uncharacterized protein LOC9322244 | ||||
TrEMBL | D7L076 | 0.0 | D7L076_ARALL; Uncharacterized protein | ||||
STRING | scaffold_304203.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1924 | 19 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G15740.1 | 1e-146 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | 900233 |
Entrez Gene | 9322244 |