PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 900055
Common NameARALYDRAFT_900055
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 276aa    MW: 29786.4 Da    PI: 8.4264
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
900055genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.000776584221
             EETTTTEEESSHHHHHHHHH CS
  zf-C2H2  2 kCpdCgksFsrksnLkrHir 21
             +C+ Cgk F +   L  H+r
   900055 65 PCTECGKQFGSLKALFGHMR 84
             5******************8 PP
2zf-C2H212.40.00049147169123
              EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
              +kC+ C+k+F ++  L  H  tH
   900055 147 FKCGGCKKVFGSHQALDGHRETH 169
              89******************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0156486IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.9516491IPR007087Zinc finger, C2H2
SuperFamilySSF576672.23E-86586No hitNo description
PfamPF139121.2E-96688IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.3E-46686IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
SuperFamilySSF576672.23E-8142169No hitNo description
SMARTSM003550.36147169IPR015880Zinc finger, C2H2-like
PfamPF139126.2E-4147170IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.055147174IPR007087Zinc finger, C2H2
PROSITE patternPS000280149171IPR007087Zinc finger, C2H2
PROSITE profilePS501579.245216243IPR007087Zinc finger, C2H2
SMARTSM003550.13216238IPR015880Zinc finger, C2H2-like
PfamPF139122.8E-11216240IPR007087Zinc finger, C2H2
PROSITE patternPS000280218238IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MSNTSNSDPN SDIPFASSNV TLPSYNQNPR RKRTKLTNNE TGSSSSSPRP KPVTQPDPDA  60
SQIAPCTECG KQFGSLKALF GHMRCHPERQ WRGINPPVKY QRGINATAAS SSSSWDLSEE  120
EHNIASLLLM LASGGVSTGS SGVEGRFKCG GCKKVFGSHQ ALDGHRETHK HVKGCFPITY  180
TTEDPPPPPP PPPPPPQEIV DKDKGKGVKL VSGMNHRCNI CFRVFSSGQA LGGHMRCHWE  240
KDQEEKQVKG IDLNVPATTS SDTTLDCSLD LRLGL*
Functional Description ? help Back to Top
Source Description
UniProtMediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00621PBMTransfer from AT2G17180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap900055
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935500.0AB493550.1 Arabidopsis thaliana At2g17180 gene for hypothetical protein, partial cds, clone: RAAt2g17180.
GenBankAC0071270.0AC007127.7 Arabidopsis thaliana chromosome 2 clone T23A1 map mi398, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBankDQ0565330.0DQ056533.1 Arabidopsis thaliana zinc finger (C2H2 type) family protein (At2g17180) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002886101.10.0zinc finger protein ZAT2
SwissprotQ9SIJ01e-153ZAT2_ARATH; Zinc finger protein ZAT2
TrEMBLD7L8S60.0D7L8S6_ARALL; Zinc finger family protein
STRINGscaffold_304025.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46191836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.11e-132C2H2-like zinc finger protein