PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

899680

Common Name

ARALYDRAFT_899680

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

NF-YC

Protein Properties

Length: 114aa MW: 13465.6 Da PI: 6.2613

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
899680	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	156.5	4.6e-49	15	113	1	99
NF-YC 1 qlksfwekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 qlk+fw+k++e + dfknh++P++rik+i+k+d+dv+mi+aeaP+l+ska e+fi++lt+r wlha+e kr +++ diaaav++t+ifdfl+d+v ++ 899680 15 QLKNFWSKEMEGDLDFKNHKFPITRIKRIMKFDPDVNMIAAEAPILFSKANEMFIMDLTMRLWLHAQERKRLKIQRFDIAAAVAQTVIFDFLLDEVTKE 113 89*********************************************************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	3.52E-25	3	106	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	6.2E-29	28	97	IPR009072	Histone-fold
Pfam	PF00808	1.2E-14	34	97	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 114 aa Download sequence Send to blast
MENNNHQQPP QDNEQLKNFW SKEMEGDLDF KNHKFPITRI KRIMKFDPDV NMIAAEAPIL 60 FSKANEMFIM DLTMRLWLHA QERKRLKIQR FDIAAAVAQT VIFDFLLDEV TKE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	3e-32	22	110	5	93	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	899680

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002865812.1	2e-63	nuclear transcription factor Y subunit C-8
Swissprot	Q4PSE2	7e-57	NFYC8_ARATH; Nuclear transcription factor Y subunit C-8
TrEMBL	D7L2N7	5e-77	D7L2N7_ARALL; Uncharacterized protein
STRING	scaffold_303650.1	9e-78	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17675	5	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G27910.1	3e-59	nuclear factor Y, subunit C8

Link Out ? help Back to Top
Phytozome	899680
Entrez Gene	9319913

Publications ? help Back to Top
Mei X, et al. Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm. Mol. Genet. Genomics, 2015. 290(5): p. 1819-31 [PMID:25851237] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]