PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 898527 | ||||||||
Common Name | ARALYDRAFT_898527 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NF-YA | ||||||||
Protein Properties | Length: 301aa MW: 32911.3 Da PI: 9.7336 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 105 | 6.7e-33 | 162 | 218 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQyq+Il+RRq+Rak+e ekkl +ksrkpylheSRh+hA+rRpRg+gGrF 898527 162 QEPVFVNAKQYQAILRRRQARAKAELEKKL-IKSRKPYLHESRHQHAMRRPRGTGGRF 218 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.9E-36 | 160 | 221 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.437 | 161 | 221 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 3.1E-28 | 163 | 218 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 9.3E-24 | 164 | 186 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 166 | 186 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 9.3E-24 | 195 | 218 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0055046 | Biological Process | microgametogenesis | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MGIEDMHSKS DSGNKIDSEV HGTLSSSINS LNPWHRAAAA CNANSCVEAG DKSSKSIALA 60 LESNGSKSPS NREDNVNKES QVTTSPQSAG SDKNQESLHP GITQPPPHPQ LVGPTVGWAS 120 SNPYQDPYYA GVMGAYGHHP LGFVPYGGMP HSRMQLPPEM AQEPVFVNAK QYQAILRRRQ 180 ARAKAELEKK LIKSRKPYLH ESRHQHAMRR PRGTGGRFAK KTNTEASPRK AEEKSNGRVT 240 QSPTSSNSDQ GEAWNVEYRT PQGDEMQSSA YKRREEGECS GQQWNSLSTN HPSQARLAIK 300 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 1e-18 | 162 | 218 | 2 | 58 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 898527 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF412056 | 0.0 | AF412056.1 Arabidopsis thaliana AT3g20910/MFD22_2 mRNA, complete cds. | |||
GenBank | AY093971 | 0.0 | AY093971.1 Arabidopsis thaliana AT3g20910/MFD22_2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002883277.1 | 0.0 | nuclear transcription factor Y subunit A-9 isoform X1 | ||||
Swissprot | Q945M9 | 0.0 | NFYA9_ARATH; Nuclear transcription factor Y subunit A-9 | ||||
TrEMBL | D7KZY1 | 0.0 | D7KZY1_ARALL; CCAAT-binding transcription factor (CBF-B/NF-YA) family protein | ||||
STRING | scaffold_302497.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13268 | 18 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20910.1 | 0.0 | nuclear factor Y, subunit A9 |
Link Out ? help Back to Top | |
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Phytozome | 898527 |
Entrez Gene | 9321478 |
Publications ? help Back to Top | |||
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