PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 898356
Common NameARALYDRAFT_898356
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 277aa    MW: 31638.4 Da    PI: 9.067
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
898356genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.86.6e-241562249
            ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
  SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
            +i+n+ n qvtfskRr g+lKKA+EL++LC+aeva+i+fs+ +k+y +
  898356 15 KIKNENNLQVTFSKRRSGLLKKASELCTLCGAEVAIIVFSPGQKVYSF 62
            59********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.9E-33665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.385666IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-28786IPR002100Transcription factor, MADS-box
CDDcd002655.90E-35778No hitNo description
PRINTSPR004043.1E-20828IPR002100Transcription factor, MADS-box
PfamPF003192.5E-251562IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-202843IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-204364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MVRKSKGRQK IEIVKIKNEN NLQVTFSKRR SGLLKKASEL CTLCGAEVAI IVFSPGQKVY  60
SFGHPNVNVV MDRFLNFNPP RPHHHNNMQP NETRRNAAVQ ELNNHLTLLS NQLEAEKKIT  120
GDLKQKRKDN KMFGNWWEEP VEELNMTQLT EFQCGLENLR KAVAYKVSKY HQADVDRRNF  180
YAGSSSNFAF GISGDTNINS TELDLFNDQR MASMNLSNYN HNMIVPNQTS PFGNNGNNTQ  240
GFAPEYKAED SQNQSQCVKQ ENVSEYAHYP HFGRDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A6e-17787181Myocyte-specific enhancer factor 2A
3kov_B6e-17787181Myocyte-specific enhancer factor 2A
3kov_I6e-17787181Myocyte-specific enhancer factor 2A
3kov_J6e-17787181Myocyte-specific enhancer factor 2A
3p57_A6e-17787181Myocyte-specific enhancer factor 2A
3p57_B6e-17787181Myocyte-specific enhancer factor 2A
3p57_C6e-17787181Myocyte-specific enhancer factor 2A
3p57_D6e-17787181Myocyte-specific enhancer factor 2A
3p57_I6e-17787181Myocyte-specific enhancer factor 2A
3p57_J6e-17787181Myocyte-specific enhancer factor 2A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap898356
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006406472.11e-118agamous-like MADS-box protein AGL62
SwissprotQ9FKK21e-102AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLD7LA220.0D7LA22_ARALL; Uncharacterized protein
STRINGscaffold_302326.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-96AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]