PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 897690
Common NameARALYDRAFT_897690
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 385aa    MW: 43047.5 Da    PI: 4.6564
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
897690genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.3e-20129178255
     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
             +y+G+r+++ +g+W+AeIrdp++     r +lg+f+taeeAa+a++aa+++++g
  897690 129 QYRGIRQRP-WGKWAAEIRDPRK---GSREWLGTFDTAEEAARAYDAAARRIRG 178
             69*******.**********954...39************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.48E-17129187No hitNo description
Gene3DG3DSA:3.30.730.102.5E-32129187IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-22129187IPR016177DNA-binding domain
SMARTSM003803.9E-39129192IPR001471AP2/ERF domain
PROSITE profilePS5103224.54129186IPR001471AP2/ERF domain
PRINTSPR003673.3E-11130141IPR001471AP2/ERF domain
PfamPF008471.0E-12130178IPR001471AP2/ERF domain
PRINTSPR003673.3E-11152168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001666Biological Processresponse to hypoxia
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MCGGAIISDF IPPPRSLRVT SEFIWPDLKN KGKKASKKRS NKRPDFFDLD DEFEADFRGF  60
KDDSAFDCED DFDDDVFVNV KPFVFTATTK PVASSVPVFA STVGSASAKK TVESDGQADT  120
SSKRKRKNQY RGIRQRPWGK WAAEIRDPRK GSREWLGTFD TAEEAARAYD AAARRIRGTK  180
AKVNFPEEKN ASVSQKRPTG KTNNLQKQVA KPNKSVTLVQ QPTHLSQQYC NNSFDNMGND  240
SFGDMSFMEE KPQMYNNQFG LTNSFDAEGN NGFQYFSSDQ GSNSFDCSEF GWRDHGPKTP  300
EISSMLVNNI QAPFVEETNA AKKLKPNSDD SDDLMAYLDN ALWDTPLEVE AMLGADAGAV  360
TQEEENPMDV WSLDEINFML EGDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-221281901376Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in carotenoid biosynthesis regulation. Binds to the 5'-ATCTA-3' element present in the promoter of phytoene synthase (PSY) and phytoene desaturase (PDS). Involved in ethylene response and resistance to necrotrophic pathogens. Acts as a downstream regulator in the ethylene signaling pathway. Partially redundant with RAP2-12. {ECO:0000269|PubMed:17873090, ECO:0000269|PubMed:20357136, ECO:0000269|PubMed:22530619}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap897690
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by darkness, ethylene and Botrytis cinerea. {ECO:0000269|PubMed:20357136, ECO:0000269|PubMed:22530619}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0545390.0AY054539.1 Arabidopsis thaliana transcription factor EREBP-like protein (At3g14230; MLN21.1) mRNA, complete cds.
GenBankBT0003740.0BT000374.1 Arabidopsis thaliana transcription factor EREBP-like protein (At3g14230) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002885024.10.0ethylene-responsive transcription factor RAP2-2
SwissprotQ9LUM40.0RAP22_ARATH; Ethylene-responsive transcription factor RAP2-2
TrEMBLD7L2E20.0D7L2E2_ARALL; Uncharacterized protein
STRINGscaffold_301660.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.20.0related to AP2 2
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Bui LT,Giuntoli B,Kosmacz M,Parlanti S,Licausi F
    Constitutively expressed ERF-VII transcription factors redundantly activate the core anaerobic response in Arabidopsis thaliana.
    Plant Sci., 2015. 236: p. 37-43
    [PMID:26025519]
  3. Gasch P, et al.
    Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis.
    Plant Cell, 2016. 28(1): p. 160-80
    [PMID:26668304]
  4. Yao Y, et al.
    ETHYLENE RESPONSE FACTOR 74 (ERF74) plays an essential role in controlling a respiratory burst oxidase homolog D (RbohD)-dependent mechanism in response to different stresses in Arabidopsis.
    New Phytol., 2017. 213(4): p. 1667-1681
    [PMID:28164334]
  5. Giuntoli B, et al.
    Age-dependent regulation of ERF-VII transcription factor activity in Arabidopsis thaliana.
    Plant Cell Environ., 2017. 40(10): p. 2333-2346
    [PMID:28741696]