PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 897360
Common NameARALYDRAFT_897360
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 264aa    MW: 29705.9 Da    PI: 7.2724
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
897360genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.25.7e-3229138199
             EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS
      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 
             f+k ltpsdv+k++rlv+pk++ae++              +e+++ l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+v F+++ r +  +
  897360  29 FEKSLTPSDVGKLNRLVIPKQHAEKYfplnnnggdddVATTEKGMLLSFEDESGKCWKFRYSYWNSSQSYVLTKGWSRYVKDKHLDAGDVVFFQRH-RfDLHR 130
             99***************************999988875566799**************************************************65.447888 PP

             .EEEEE-S CS
      B3  92 lvvkvfrk 99 
             l+++++r+
  897360 131 LFIGWRRR 138
             89999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.3E-4118146IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.15E-3125139IPR015300DNA-binding pseudobarrel domain
CDDcd100171.43E-2828129No hitNo description
PfamPF023623.2E-2929138IPR003340B3 DNA binding domain
PROSITE profilePS5086313.33829139IPR003340B3 DNA binding domain
SMARTSM010193.4E-2429139IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MSVNHYHNTL SLHQHHQNDV AISQRESLFE KSLTPSDVGK LNRLVIPKQH AEKYFPLNNN  60
GGDDDVATTE KGMLLSFEDE SGKCWKFRYS YWNSSQSYVL TKGWSRYVKD KHLDAGDVVF  120
FQRHRFDLHR LFIGWRRRGE ASSSPAVSAV SQEALVNTTA YWSGMTTPYR QVHASTTYPN  180
IHQEYSHYGA VADQAQSIPP VVAGSSRTVR LFGVNLECHG DAVEPPPRPD GYNGQHIYYY  240
STPHPMNISF AGEALEQVGD GRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-49221381113B3 domain-containing transcription factor NGA1
5os9_B2e-49221381113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap897360
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4410760.0AJ441076.1 Arabidopsis thaliana mRNA for putative auxin response factor 32 (arf32 gene).
GenBankAK1752810.0AK175281.1 Arabidopsis thaliana mRNA for putative DNA binding protein, complete cds, clone: RAFL21-71-N13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002884852.10.0B3 domain-containing protein At3g11580
SwissprotQ8RYD31e-180Y3158_ARATH; B3 domain-containing protein At3g11580
TrEMBLD7LAP40.0D7LAP4_ARALL; Uncharacterized protein
STRINGscaffold_301330.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11580.10.0B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]