PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 897310 | ||||||||
Common Name | ARALYDRAFT_897310 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | Trihelix | ||||||||
Protein Properties | Length: 255aa MW: 28889.3 Da PI: 5.1728 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 43.8 | 6.5e-14 | 27 | 107 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W+++ + +Liea ++ +l+rg+l++++W+ev++++ + g ++ +qCk++++ l+k+yk +k+ + ++ +fd+l+ 897310 27 WSEDATATLIEAWGDRYVNLNRGNLRQNDWKEVADAVnssHGNGRPKTDVQCKNRIDTLKKKYKTEKAKPLS-------NWCFFDRLD 107 *************************************9666667788******************9987765.......588888875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 7.1E-25 | 25 | 108 | No hit | No description |
SMART | SM00595 | 8.7E-4 | 34 | 115 | IPR006578 | MADF domain |
Gene3D | G3DSA:1.10.601.10 | 7.5E-4 | 138 | 227 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
METTPETQSK THQSGSNRLP AGREDWWSED ATATLIEAWG DRYVNLNRGN LRQNDWKEVA 60 DAVNSSHGNG RPKTDVQCKN RIDTLKKKYK TEKAKPLSNW CFFDRLDFLI GPVMKKSSGG 120 VVKSAFMNPN LNPTGSKSTG SSLDDDDDDD DDDEEDDDDA GDWGFVVRKH RKVEDVDPSE 180 GSAFRELARS ILKLGEAFER IEGKKQQMMI ELEKQRMEVA KELELQRMNM LMEMQLELEK 240 SKLGKRRAAS GKKL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 897310 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY064137 | 0.0 | AY064137.1 Arabidopsis thaliana AT3g11100/F11B9_105 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002884830.1 | 0.0 | trihelix transcription factor ASIL2 | ||||
Swissprot | Q9LJG8 | 1e-32 | ASIL2_ARATH; Trihelix transcription factor ASIL2 | ||||
TrEMBL | D7L9U5 | 0.0 | D7L9U5_ARALL; Transcription factor | ||||
STRING | scaffold_301280.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4926 | 21 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11100.1 | 1e-142 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | 897310 |
Entrez Gene | 9318782 |