PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

897268

Common Name

ARALYDRAFT_897268

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

G2-like

Protein Properties

Length: 335aa MW: 35887.8 Da PI: 6.9403

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
897268	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	96.5	2e-30	101	154	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl 897268 101 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 154 59*****************.******************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.059	98	157	IPR017930	Myb domain
SuperFamily	SSF46689	3.4E-20	98	158	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-30	100	159	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.7E-24	102	154	IPR006447	Myb domain, plants
Pfam	PF00249	1.3E-7	104	153	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MREDDSDWFA RWEEELPSPE ELMPISQSLI SPDLALAFDI RSPNHGNGNS NQPHHHQTTP 60 PTPSQLQLPS SQANSSAEFA ADSADLGSGA AGDEPARTLK RPRLVWTPQL HKRFVDAVAH 120 LGIKNAVPKT IMQLMSVDGL TRENVASHLQ KYRLYLKRMQ GLSSGGGAGS DPATDRLFAS 180 SPVPAHFLHP NRVPSSDHFM PSFVPIATLQ QQQQMAAAAA AAAAAANPHL QPPQFHRQIA 240 AAHFGSPTNG GFSSPTNGQF GSPASNGFGS PTANGKFDPS FLAVRQTPQQ QQQPIHRMST 300 PSLHSPVGNY VEDLESANAN GGRTVLTLFP TRDD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lxu_A	1e-32	101	157	1	57	Transcription factor LUX
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269\|PubMed:20331973}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	897268

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269\|PubMed:20331973}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	ATAC011708	0.0	AC011708.8 Arabidopsis thaliana chromosome III BAC T7M13 genomic sequence, complete sequence.
GenBank	CP002686	0.0	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002882695.1	0.0	transcription factor MYBC1
Swissprot	O22210	3e-72	MYBC1_ARATH; Transcription factor MYBC1
TrEMBL	D7L9Q6	0.0	D7L9Q6_ARALL; Uncharacterized protein
STRING	scaffold_301238.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1549	27	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10760.1	1e-159	G2-like family protein

Link Out ? help Back to Top
Phytozome	897268
Entrez Gene	9318761

Publications ? help Back to Top
Sardesai N,Laluk K,Mengiste T,Gelvin S The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium. Plant Signal Behav, 2018. [PMID:24785741]