PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 895569
Common NameARALYDRAFT_895569
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family Trihelix
Protein Properties Length: 599aa    MW: 67109.4 Da    PI: 6.1766
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
895569genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix91.11.2e-2856140187
  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
               rW++qe+laL+++r++m+ ++r+++ k+plWeevs+km+e g+ r++k+Ckek+en+ k++k++keg+ ++++++  t+++fdqlea
    895569  56 RWPRQETLALLKIRSDMGIAFRDASVKGPLWEEVSRKMAELGYIRNAKKCKEKFENVYKYHKRTKEGRTGKSEGK--TYRFFDQLEA 140
               8********************************************************************975544..6*******85 PP
2trihelix105.34.4e-33399484187
  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
               rW+k e+ aLi++r++++++++++  k+plWee+s+ mr+ gf+r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
    895569 399 RWPKVEIEALIKLRTNLDSKYQENGPKGPLWEEISAGMRRLGFNRNSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 484
               8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.1253115IPR001005SANT/Myb domain
CDDcd122034.23E-2255120No hitNo description
PfamPF138375.8E-1855141No hitNo description
PROSITE profilePS500906.95755113IPR017877Myb-like domain
PROSITE profilePS500907.201392456IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.2E-4396455IPR009057Homeodomain-like
SMARTSM007170.0017396458IPR001005SANT/Myb domain
CDDcd122036.06E-27398463No hitNo description
PfamPF138373.3E-22398485No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MMQLGGTPTT TAAATTATAP PQSNNNDSAA TEAAAAAVGA FEVSEEMNDR GFGGNRWPRQ  60
ETLALLKIRS DMGIAFRDAS VKGPLWEEVS RKMAELGYIR NAKKCKEKFE NVYKYHKRTK  120
EGRTGKSEGK TYRFFDQLEA LESQSTTSLH HPQPQSQPRP PQNNNNIFST PPPVTTVMPT  180
VANMSTLPSS SIPPYTQQIN VPSFPNISGD FLSDNSTSSS SSYSTSSDME IGGGTTTTRK  240
KRKRKWKEFF ERLMKQVVDK QEELQRKFLE AVEKREHERL VREESWRVQE IARINREHEI  300
LAQERSMSAA KDAAVMAFLQ KLSEKQPNQP TAAQPQPQQV RPQMQLNNNN NQQQTPQPSP  360
PPPPPPLPQA IQAVVPTLDT TKTDNGDQNM TPASASSSRW PKVEIEALIK LRTNLDSKYQ  420
ENGPKGPLWE EISAGMRRLG FNRNSKRCKE KWENINKYFK KVKESNKKRP EDSKTCPYFH  480
QLDALYRERN KFHTNNVNIA AASSSASGLV KPDNSVPLMV QPEQQWPPAV TTATTTAAVA  540
AAQPDQHPQP SDQNFDDEEG SDEEYDDEDE DEENEEEEGG EFELVPSNNN NNKTTNNL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1238243RKKRKR
2238244RKKRKRK
3239244KKRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap895569
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0792830.0AC079283.4 Arabidopsis thaliana chromosome 1 BAC F7O12 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002887660.10.0trihelix transcription factor GT-2
SwissprotQ391171e-152TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLD7KTX90.0D7KTX9_ARALL; Uncharacterized protein
STRINGscaffold_202643.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48492553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.10.0Trihelix family protein