PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 893748 | ||||||||
Common Name | ARALYDRAFT_893748 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 102aa MW: 11728.5 Da PI: 9.979 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.9 | 6.4e-12 | 8 | 96 | 2 | 89 |
EEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 +k+l+ sd + s+ l+lpk+++e++ ++++++++ + d ++s+ v+l r ++++ ++++GWk+ +a Lk+gD++ ++ ++ ++ 893748 8 VKKLKDSDLSYSNALYLPKDYVENIvrstgVPIPRNGIQVEILDN-NNSYWVNL--RENQKGPYIGNGWKNIKDARSLKTGDVIKLYWKD-TK 96 6999******************999*9988455678888999995.566669**..99999************************99543.44 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.6E-12 | 2 | 94 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.51E-15 | 3 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.49E-13 | 6 | 100 | No hit | No description |
SMART | SM01019 | 3.3E-8 | 7 | 101 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.46 | 7 | 101 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-9 | 8 | 96 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 102 aa Download sequence Send to blast |
MNPNMMLVKK LKDSDLSYSN ALYLPKDYVE NIVRSTGVPI PRNGIQVEIL DNNNSYWVNL 60 RENQKGPYIG NGWKNIKDAR SLKTGDVIKL YWKDTKFIFS M* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 893748 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002886734.1 | 5e-68 | B3 domain-containing protein At1g08985 | ||||
Swissprot | Q8GWU1 | 6e-50 | Y1898_ARATH; B3 domain-containing protein At1g08985 | ||||
TrEMBL | D7KYM6 | 1e-66 | D7KYM6_ARALL; Uncharacterized protein | ||||
STRING | scaffold_200822.1 | 2e-67 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14170 | 12 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G08985.1 | 2e-52 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | 893748 |
Entrez Gene | 9324334 |