PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

893571

Common Name

ARALYDRAFT_893571

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

M-type_MADS

Protein Properties

Length: 299aa MW: 33065.9 Da PI: 7.0093

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
893571	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	36.6	5.9e-12	23	64	9	50
HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +q f +R g+ KKA ELSvLC+ v i +++++ l+ ++ 893571 23 KQSFFKQRFPGLKKKATELSVLCGNSVGFICYGPDNDLHVWP 64 4445667889*******************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00266	4.02E-19	20	92	No hit	No description
Pfam	PF00319	3.0E-11	20	63	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	11.577	20	67	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.14E-14	20	99	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MAPRDKKPNK SSSEDDDLQR KKKQSFFKQR FPGLKKKATE LSVLCGNSVG FICYGPDNDL 60 HVWPQPHDHN PQTLTQIVAK FNALSDNKRM HNACDLYDFP NLKGLSGDEL RNHLVNLDSH 120 LVGVKQHKIS ILRNLKKPKS KETEEDDHLR VSDNNTIISN RKVFSSEDQR LGFGGVFDEL 180 GYVLRGSHET VSNIVSSTAS KVSRDVGSVT DSSLLNPFTL GFSNDYFPAV LMAVTNNLGV 240 CANNGGVWDL SWIDSKFSST LFTDDWTVSG YNPLLGATDS FTASTYQTPV TDNLGSVF*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	893571

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP002684	3e-77	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBank	T2K10	3e-77	AC005966.2 Arabidopsis thaliana chromosome 1 BAC T2K10 sequence, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002888172.1	0.0	agamous-like MADS-box protein AGL49
Swissprot	Q9ZUI9	9e-76	AGL49_ARATH; Agamous-like MADS-box protein AGL49
TrEMBL	D7KXG1	0.0	D7KXG1_ARALL; Uncharacterized protein
STRING	scaffold_200645.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11232	9	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G60040.1	2e-67	AGAMOUS-like 49

Link Out ? help Back to Top
Phytozome	893571
Entrez Gene	9322721

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]