PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

892725

Common Name

ARALYDRAFT_892725

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 321aa MW: 36424 Da PI: 7.0849

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
892725	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.9	1.3e-11	128	179	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er RR+ +N+ ++ Lr+l+P++ + ++ + a+i+ +++I++L+ 892725 128 QRMTHIAVERSRRKLMNEYLSVLRSLMPNS---YVQRCDQASIVGGSINFIRELE 179 79**************************...9****************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.96E-14	127	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.913	127	178	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-12	127	183	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.57E-9	127	183	No hit	No description
Pfam	PF00010	5.2E-9	128	179	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.8E-7	133	184	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MALEGVFLQH DNIFSYNGKE AYSNIYTEDE PHFYDLQASL GFLDSQTENY NSSFLQEDYY 60 ENNTTFLHQP LPEIAISEAN ITANRNSSGS PNCDMSYHRD SEINTTRKKK ATRRRTRVKK 120 NKEEINSQRM THIAVERSRR KLMNEYLSVL RSLMPNSYVQ RCDQASIVGG SINFIRELEH 180 RLHLLNANRE QNKNSLSCRD ISSATPFSDA FKLPQISIGS SAVSENVVLN NALADIEVSL 240 VECHASLKIR SRRGPKILLN LVSGLQSLGF IILHLNVSTV SDFILYCFST KMEDYCKLNS 300 VADISTAVHE ILRIHDDCQK *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	892725

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002894606.1	0.0	transcription factor bHLH94
Swissprot	Q9C7T4	1e-60	BH096_ARATH; Transcription factor bHLH96
TrEMBL	D7KPZ4	0.0	D7KPZ4_ARALL; Uncharacterized protein
STRING	scaffold_105519.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14299	18	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	3e-62	bHLH family protein

Link Out ? help Back to Top
Phytozome	892725
Entrez Gene	9330667

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]