PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 892558
Common NameARALYDRAFT_892558
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GRAS
Protein Properties Length: 447aa    MW: 50169.6 Da    PI: 6.4561
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
892558genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS434.39.1e-133414461374
    GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaal..................... 81 
             l++lL+++A++vs++++++aq+lL+ ls ++sp+gd+++Rl++ ft+AL+ r++r +++ +++++++++t+e+++s+++ ++                     
  892558  41 LRRLLFTAANFVSQSNFTAAQNLLSILSLNSSPHGDSTERLVHLFTKALSVRINRqQQDPTAETVATWTTNEMTMSNSTVFTssvckeqflfrtknnnsdfes 143
             689****************************************************8889999*********999666665556779999*******9999998 PP

    GRAS  82 ...klfsevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvp 175
                  +++++P+++f+hltaNqaIl+a+e++   ++Hi+D+disqGlQWp+L+qaLa+R+    ++ppslRiTg+g+    + + l++tg+rL++fA++lg++
  892558 144 cyyLWLNQLTPFIRFGHLTANQAILDATETNdnGALHILDLDISQGLQWPPLMQALAERSsnpnSPPPSLRITGCGR----DVTGLNRTGDRLTRFADSLGLQ 242
             66444************************9977899***********************988877799*********....********************** PP

    GRAS 176 fefnvlvakrledl.....eleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
             f+f++lv  + edl     +++ L+++   gE++aVn+v+ lh+++++++++     ++L+++ksl+P++v+++e+ea+h+++sFl+rf+ea+++y+a+fdsl
  892558 243 FQFHTLVIVEEEDLaglllQIRLLALSAvqGETIAVNCVHFLHKIFNDDGDMIG---HFLSAIKSLNPRIVTMAEREANHGDHSFLNRFSEAVDHYMAIFDSL 342
             ******655555543334455555555566**********************99...********************************************** PP

    GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
             ea+lp++s+er ++E++++g ei +vva+e +er++rh+++e W+e+++++GF +vp++++a +qaklllr ++ s+gy+++  ++sl+lgW++r L+svS+W
  892558 343 EATLPPNSRERLTLEQRWFGMEILDVVAAEATERKQRHRRFEIWEEMMKRFGFVNVPIGSFALSQAKLLLRLHYpSEGYNLQFLNNSLFLGWQNRLLFSVSSW 445
             ******************************************************************************************************* PP

    GRAS 374 r 374
             +
  892558 446 K 446
             8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.54915425IPR005202Transcription factor GRAS
PfamPF035143.1E-13041446IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010223Biological Processsecondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MLTSFKSSSS SSEDATATTT DNPPPFFLAS SSAATSASHH LRRLLFTAAN FVSQSNFTAA  60
QNLLSILSLN SSPHGDSTER LVHLFTKALS VRINRQQQDP TAETVATWTT NEMTMSNSTV  120
FTSSVCKEQF LFRTKNNNSD FESCYYLWLN QLTPFIRFGH LTANQAILDA TETNDNGALH  180
ILDLDISQGL QWPPLMQALA ERSSNPNSPP PSLRITGCGR DVTGLNRTGD RLTRFADSLG  240
LQFQFHTLVI VEEEDLAGLL LQIRLLALSA VQGETIAVNC VHFLHKIFND DGDMIGHFLS  300
AIKSLNPRIV TMAEREANHG DHSFLNRFSE AVDHYMAIFD SLEATLPPNS RERLTLEQRW  360
FGMEILDVVA AEATERKQRH RRFEIWEEMM KRFGFVNVPI GSFALSQAKL LLRLHYPSEG  420
YNLQFLNNSL FLGWQNRLLF SVSSWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-594844526378Protein SCARECROW
5b3h_A2e-594844525377Protein SCARECROW
5b3h_D2e-594844525377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap892558
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0023280.0AC002328.2 Genomic sequence for Arabidopsis thaliana BAC F20N2 from chromosome I, complete sequence.
GenBankAC0052230.0AC005223.1 Arabidopsis thaliana chromosome I BAC T5A14, complete sequence.
GenBankAY1964820.0AY196482.1 Arabidopsis thaliana lateral suppressor (LAS) mRNA, complete cds.
GenBankBT0265190.0BT026519.1 Arabidopsis thaliana At1g55580 mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002891845.10.0scarecrow-like protein 18
SwissprotQ9ZWC50.0SCL18_ARATH; Scarecrow-like protein 18
TrEMBLD7KMZ60.0D7KMZ6_ARALL; Uncharacterized protein
STRINGscaffold_105352.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM113292733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.10.0GRAS family protein
Publications ? help Back to Top
  1. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]