PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 892135
Common NameARALYDRAFT_892135
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GATA
Protein Properties Length: 303aa    MW: 33039.7 Da    PI: 6.8872
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
892135genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.72.2e-15224259134
    GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
             C++Cg  +  Tp++Rrgp g++tLCnaCGl+++ kg
  892135 224 CRHCGIGEksTPMMRRGPAGPRTLCNACGLMWANKG 259
             ****865556***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.51378113IPR010399Tify domain
SMARTSM009797.6E-1178113IPR010399Tify domain
PfamPF062003.0E-1180112IPR010399Tify domain
PROSITE profilePS5101712.987148190IPR010402CCT domain
PfamPF062032.1E-15148190IPR010402CCT domain
PROSITE profilePS501148.695218274IPR000679Zinc finger, GATA-type
SMARTSM004011.4E-12218271IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-13219282No hitNo description
Gene3DG3DSA:3.30.50.105.6E-15222265IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.79E-14223266No hitNo description
PfamPF003203.2E-13224259IPR000679Zinc finger, GATA-type
PROSITE patternPS003440224251IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MDDLHGSNSR MQHIGEAQDP MHVQYEHHAL HHIHNGSGMV DDHADDGNAG GMSEGVETDI  60
PSHPGNITDN RGEVVDHGSE QGDQLTLSFQ GQVYVFDSVL PEKVQAVLLL LGGRELPQAA  120
PPGLGSPHQN NRISSLPGTP QRFSIPQRLA SLVRFREKRK GRNFDKKIRY TVRKEVALRM  180
QRNKGQFTSA KSNNDEAASA GSSWASNQTW AIEGSEAQHQ EISCRHCGIG EKSTPMMRRG  240
PAGPRTLCNA CGLMWANKGA LRDLSKASPQ TAQNLPLNKN EDANLETDQM MITVANNISD  300
SQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap892135
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1190610.0AB119061.1 Arabidopsis thaliana ZML2 mRNA for GATA-type zinc finger protein, complete cds.
GenBankAY1503950.0AY150395.1 Arabidopsis thaliana putative flowering protein CONSTANS (At1g51600) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002891646.10.0GATA transcription factor 28
SwissprotQ8H1G00.0GAT28_ARATH; GATA transcription factor 28
TrEMBLD7KHT90.0D7KHT9_ARALL; Uncharacterized protein
STRINGscaffold_104929.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36842659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.20.0ZIM-LIKE 2