PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 892084 | ||||||||
Common Name | ARALYDRAFT_892084 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C2H2 | ||||||||
Protein Properties | Length: 335aa MW: 38152.3 Da PI: 7.0299 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.8 | 0.00017 | 170 | 189 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C k+F+r n++ H+ 892084 170 FSCHLCLKTFNRYNNMQMHM 189 89*****************9 PP | |||||||
2 | zf-C2H2 | 13.1 | 0.00029 | 254 | 276 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C Cgk F k + ++H +++ 892084 254 FACRRCGKAFAVKGDWRTHEKNC 276 78*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 8.5E-4 | 170 | 189 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.577 | 170 | 197 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 172 | 192 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.38E-6 | 236 | 274 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.1E-5 | 240 | 274 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 8.767 | 254 | 274 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MSNPACSNLF NNGCDHNNFN YSTSLSYIYN SHESFYYPNY INHTPTTFTS PNSPPLREAL 60 PLLSLSPIRH QEQQDQHYFM DTDQISSSNF LDDPHVTVDL HLGQPNYGVG ENIRSYIAPD 120 TTTDDQDHDR GVEVTVESYL HDDDDHGDLH RAHHYWIPTP SQILIGPTQF SCHLCLKTFN 180 RYNNMQMHMW GHGSQYRKGP ESLRGTQPTG MLRLPCFCCA PGCKNNIDHP RAKPLKDFRT 240 LQTHYKRKHG SRPFACRRCG KAFAVKGDWR THEKNCGKLW YCSCGSDFKH KRSLKDHVKA 300 FGSGHVPCGI DSFGGDHEDY YEAASDIEQT MSVS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00197 | DAP | Transfer from AT1G51220 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 892084 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ311810 | 0.0 | AJ311810.2 Arabidopsis thaliana mRNA for WIP5 protein (At1g51220 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002894301.1 | 0.0 | zinc finger protein WIP5 | ||||
Swissprot | Q8W031 | 0.0 | ZWIP5_ARATH; Zinc finger protein WIP5 | ||||
TrEMBL | D7KHP2 | 0.0 | D7KHP2_ARALL; Zinc finger protein | ||||
STRING | scaffold_104878.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM239 | 28 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51220.1 | 0.0 | WIP domain protein 5 |
Link Out ? help Back to Top | |
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Phytozome | 892084 |
Entrez Gene | 9327686 |
Publications ? help Back to Top | |||
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