PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 890960
Common NameARALYDRAFT_890960
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 175aa    MW: 19631.8 Da    PI: 4.7663
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
890960genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.6e-192069356
     AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
            ykGVr++k +g+Wv+eIr+p   gk++r++lg++ ta +Aa+a++aa+++l+g+
  890960 20 YKGVRRRK-WGKWVSEIREP---GKKTRIWLGSYETAAMAAAAYDAAALYLRGH 69
            9****998.**********8...557**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.1421976IPR001471AP2/ERF domain
SMARTSM003801.3E-321982IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.4E-302077IPR001471AP2/ERF domain
CDDcd000182.75E-172078No hitNo description
PfamPF008473.8E-142069IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-212077IPR016177DNA-binding domain
PRINTSPR003675.2E-92031IPR001471AP2/ERF domain
PRINTSPR003675.2E-94258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MENNYVGQRE QRFSVDQLSY KGVRRRKWGK WVSEIREPGK KTRIWLGSYE TAAMAAAAYD  60
AAALYLRGHG TNLNFPELAD SFPRPESSSS EHVQAAAQEA ALKFKPGGST EPALESGQGL  120
SRVGLSPDQI QAINEFPLDS PRLGWMQDLE VTDYEELYGR YFGQYDECLE MQQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-152081668ATERF1
3gcc_A7e-152081668ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12026KGVRRRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap890960
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002891059.11e-127ethylene-responsive transcription factor ERF022
SwissprotQ9LQ284e-98ERF22_ARATH; Ethylene-responsive transcription factor ERF022
TrEMBLD7KJA11e-126D7KJA1_ARALL; Uncharacterized protein
STRINGscaffold_103754.11e-126(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33760.19e-99ERF family protein