PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 889097 | ||||||||
Common Name | ARALYDRAFT_889097 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | STAT | ||||||||
Protein Properties | Length: 866aa MW: 96878.8 Da PI: 4.8193 | ||||||||
Description | STAT family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | STAT | 195.5 | 5.4e-61 | 164 | 282 | 1 | 118 |
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkk.ypfleavs 102 ldvvl+na+gqpv+kdv+vvasLlyadsg++vek++d+eapLL+sy+Gvefs+ed+p++ll+G+asfklk+sqLssk+d+rLf++kfeip++k+ ypfle+v+ 889097 164 LDVVLTNAIGQPVHKDVKVVASLLYADSGMPVEKMSDSEAPLLVSYEGVEFSAEDKPCNLLNGCASFKLKLSQLSSKSDKRLFCVKFEIPEVKAyYPFLETVT 266 8********************************************************************************************988******* PP STAT 103 kpirCisrsrntrsss 118 ++irCisr++++ + + 889097 267 NQIRCISRNHDSLTPK 282 **********986655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.505.10 | 4.0E-6 | 524 | 558 | IPR000980 | SH2 domain |
SuperFamily | SSF55550 | 6.64E-9 | 524 | 556 | IPR000980 | SH2 domain |
TIGRFAMs | TIGR02749 | 2.9E-157 | 563 | 864 | IPR014120 | Solanesyl diphosphate synthase |
SuperFamily | SSF48576 | 7.52E-80 | 564 | 863 | IPR008949 | Isoprenoid synthase domain |
Gene3D | G3DSA:1.10.600.10 | 7.2E-93 | 567 | 863 | IPR008949 | Isoprenoid synthase domain |
CDD | cd00685 | 4.31E-87 | 567 | 863 | No hit | No description |
Pfam | PF00348 | 5.4E-72 | 572 | 817 | IPR000092 | Polyprenyl synthetase |
PROSITE pattern | PS00723 | 0 | 627 | 641 | IPR000092 | Polyprenyl synthetase |
PROSITE pattern | PS00444 | 0 | 749 | 761 | IPR000092 | Polyprenyl synthetase |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008299 | Biological Process | isoprenoid biosynthetic process | ||||
GO:0015979 | Biological Process | photosynthesis | ||||
GO:0016765 | Molecular Function | transferase activity, transferring alkyl or aryl (other than methyl) groups |
Sequence ? help Back to Top |
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Protein Sequence Length: 866 aa Download sequence Send to blast |
MSVSAPFLVL DENKKMMLLP LTLLHNEAPD PVNISSWTEV PNVSTTAEFP LQKWVHVGCE 60 VSRNYMRLYI CGEIVGEQVL TSLMTNSTNS DCARKISLFS VGGDGYSVQG FIHCAEVLPS 120 NVPANYHYTK DPPLWLSVDK PSTSGIGLDK DGVWIIVSGT FCSLDVVLTN AIGQPVHKDV 180 KVVASLLYAD SGMPVEKMSD SEAPLLVSYE GVEFSAEDKP CNLLNGCASF KLKLSQLSSK 240 SDKRLFCVKF EIPEVKAYYP FLETVTNQIR CISRNHDSLT PKRSNRIDYP LDGGEPELAS 300 RSNGTSDILH SSSSMKRIRL GEEKVSESET ENGNGTSMEW RPQNHEEEDE EDNSSTDSEN 360 TEIRDSTAFR RYTISDSIIF KYCLGNLTER ALLLKEITNN SSDEEVSEFV DQVSLYSGCF 420 HHSYQIKMAR QLIAEGTNAW NLISRNYQHV HWDNVVIEIE EHFMRIAKCS SRSLTHQDFD 480 LLRRICGCYE YITQENFEKM WCWLFPVASA ISRGLINGMW RSASPKWIEG FVTKEEAERS 540 LQNQVAGTFI LRFPTSRSWP HPDIVGAENP VLISAAEQIF SAGGKRMRPG LVFLVSRATA 600 ELAGLKELTV EHRRLGEIIE MIHTASLIHD DVLDESDMRR GKETVHELFG TRVAVLAGDF 660 MFAQASWYLA NLENLQVIKL ISQVIKDFAS GEIKQASSLF DCDVELDDYL LKSYYKTASL 720 VAASTKGAAI FSKVESEVAE QMYQFGKNLG LSFQVVDDIL DFTQSTEQLG KPAANDLAKG 780 NITAPVIFAL ENEPRLREII ESEFCEPGSL EEAIEIVRNR GGIKKAQELA KEKGELALKN 840 LNCLPRSGFR SALEDMVMFN LERID* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3aq0_A | 5e-64 | 563 | 847 | 27 | 324 | Geranyl diphosphate synthase |
3aq0_B | 5e-64 | 563 | 847 | 27 | 324 | Geranyl diphosphate synthase |
3aq0_C | 5e-64 | 563 | 847 | 27 | 324 | Geranyl diphosphate synthase |
3aq0_D | 5e-64 | 563 | 847 | 27 | 324 | Geranyl diphosphate synthase |
3aq0_E | 5e-64 | 563 | 847 | 27 | 324 | Geranyl diphosphate synthase |
3aq0_F | 5e-64 | 563 | 847 | 27 | 324 | Geranyl diphosphate synthase |
3aq0_G | 5e-64 | 563 | 847 | 27 | 324 | Geranyl diphosphate synthase |
3aq0_H | 5e-64 | 563 | 847 | 27 | 324 | Geranyl diphosphate synthase |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 889097 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB104727 | 0.0 | AB104727.1 Arabidopsis thaliana At-SPS2 mRNA for solanesyl diphosphate synthase, complete cds. | |||
GenBank | AB188498 | 0.0 | AB188498.1 Arabidopsis thaliana SPS2 mRNA solanesyl diphosphate synthase 2, complete cds. | |||
GenBank | BT004246 | 0.0 | BT004246.1 Arabidopsis thaliana clone RAFL15-37-G01 (R50196) putative geranyl diphosphate synthase (GPPS) (dimethylallyltransferase) (At1g17050) mRNA, partial cds. | |||
GenBank | BT028962 | 0.0 | BT028962.1 Arabidopsis thaliana At1g17050 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020869601.1 | 0.0 | uncharacterized protein LOC9326263, partial | ||||
Swissprot | B5X561 | 0.0 | SHA_ARATH; SH2 domain-containing protein A | ||||
TrEMBL | D7KEL3 | 0.0 | D7KEL3_ARALL; Uncharacterized protein | ||||
STRING | scaffold_101891.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5205 | 26 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17040.2 | 0.0 | SH2 domain protein A |
Link Out ? help Back to Top | |
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Phytozome | 889097 |
Entrez Gene | 9326263 |
Publications ? help Back to Top | |||
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