PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 889097
Common NameARALYDRAFT_889097
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family STAT
Protein Properties Length: 866aa    MW: 96878.8 Da    PI: 4.8193
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
889097genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT195.55.4e-611642821118
    STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkk.ypfleavs 102
             ldvvl+na+gqpv+kdv+vvasLlyadsg++vek++d+eapLL+sy+Gvefs+ed+p++ll+G+asfklk+sqLssk+d+rLf++kfeip++k+ ypfle+v+
  889097 164 LDVVLTNAIGQPVHKDVKVVASLLYADSGMPVEKMSDSEAPLLVSYEGVEFSAEDKPCNLLNGCASFKLKLSQLSSKSDKRLFCVKFEIPEVKAyYPFLETVT 266
             8********************************************************************************************988******* PP

    STAT 103 kpirCisrsrntrsss 118
             ++irCisr++++ + +
  889097 267 NQIRCISRNHDSLTPK 282
             **********986655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.505.104.0E-6524558IPR000980SH2 domain
SuperFamilySSF555506.64E-9524556IPR000980SH2 domain
TIGRFAMsTIGR027492.9E-157563864IPR014120Solanesyl diphosphate synthase
SuperFamilySSF485767.52E-80564863IPR008949Isoprenoid synthase domain
Gene3DG3DSA:1.10.600.107.2E-93567863IPR008949Isoprenoid synthase domain
CDDcd006854.31E-87567863No hitNo description
PfamPF003485.4E-72572817IPR000092Polyprenyl synthetase
PROSITE patternPS007230627641IPR000092Polyprenyl synthetase
PROSITE patternPS004440749761IPR000092Polyprenyl synthetase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008299Biological Processisoprenoid biosynthetic process
GO:0015979Biological Processphotosynthesis
GO:0016765Molecular Functiontransferase activity, transferring alkyl or aryl (other than methyl) groups
Sequence ? help Back to Top
Protein Sequence    Length: 866 aa     Download sequence    Send to blast
MSVSAPFLVL DENKKMMLLP LTLLHNEAPD PVNISSWTEV PNVSTTAEFP LQKWVHVGCE  60
VSRNYMRLYI CGEIVGEQVL TSLMTNSTNS DCARKISLFS VGGDGYSVQG FIHCAEVLPS  120
NVPANYHYTK DPPLWLSVDK PSTSGIGLDK DGVWIIVSGT FCSLDVVLTN AIGQPVHKDV  180
KVVASLLYAD SGMPVEKMSD SEAPLLVSYE GVEFSAEDKP CNLLNGCASF KLKLSQLSSK  240
SDKRLFCVKF EIPEVKAYYP FLETVTNQIR CISRNHDSLT PKRSNRIDYP LDGGEPELAS  300
RSNGTSDILH SSSSMKRIRL GEEKVSESET ENGNGTSMEW RPQNHEEEDE EDNSSTDSEN  360
TEIRDSTAFR RYTISDSIIF KYCLGNLTER ALLLKEITNN SSDEEVSEFV DQVSLYSGCF  420
HHSYQIKMAR QLIAEGTNAW NLISRNYQHV HWDNVVIEIE EHFMRIAKCS SRSLTHQDFD  480
LLRRICGCYE YITQENFEKM WCWLFPVASA ISRGLINGMW RSASPKWIEG FVTKEEAERS  540
LQNQVAGTFI LRFPTSRSWP HPDIVGAENP VLISAAEQIF SAGGKRMRPG LVFLVSRATA  600
ELAGLKELTV EHRRLGEIIE MIHTASLIHD DVLDESDMRR GKETVHELFG TRVAVLAGDF  660
MFAQASWYLA NLENLQVIKL ISQVIKDFAS GEIKQASSLF DCDVELDDYL LKSYYKTASL  720
VAASTKGAAI FSKVESEVAE QMYQFGKNLG LSFQVVDDIL DFTQSTEQLG KPAANDLAKG  780
NITAPVIFAL ENEPRLREII ESEFCEPGSL EEAIEIVRNR GGIKKAQELA KEKGELALKN  840
LNCLPRSGFR SALEDMVMFN LERID*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3aq0_A5e-6456384727324Geranyl diphosphate synthase
3aq0_B5e-6456384727324Geranyl diphosphate synthase
3aq0_C5e-6456384727324Geranyl diphosphate synthase
3aq0_D5e-6456384727324Geranyl diphosphate synthase
3aq0_E5e-6456384727324Geranyl diphosphate synthase
3aq0_F5e-6456384727324Geranyl diphosphate synthase
3aq0_G5e-6456384727324Geranyl diphosphate synthase
3aq0_H5e-6456384727324Geranyl diphosphate synthase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap889097
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1047270.0AB104727.1 Arabidopsis thaliana At-SPS2 mRNA for solanesyl diphosphate synthase, complete cds.
GenBankAB1884980.0AB188498.1 Arabidopsis thaliana SPS2 mRNA solanesyl diphosphate synthase 2, complete cds.
GenBankBT0042460.0BT004246.1 Arabidopsis thaliana clone RAFL15-37-G01 (R50196) putative geranyl diphosphate synthase (GPPS) (dimethylallyltransferase) (At1g17050) mRNA, partial cds.
GenBankBT0289620.0BT028962.1 Arabidopsis thaliana At1g17050 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020869601.10.0uncharacterized protein LOC9326263, partial
SwissprotB5X5610.0SHA_ARATH; SH2 domain-containing protein A
TrEMBLD7KEL30.0D7KEL3_ARALL; Uncharacterized protein
STRINGscaffold_101891.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52052645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17040.20.0SH2 domain protein A
Publications ? help Back to Top
  1. Yamada Y,Wang HY,Fukuzawa M,Barton GJ,Williams JG
    A new family of transcription factors.
    Development, 2008. 135(18): p. 3093-101
    [PMID:18701541]