PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 887762
Common NameARALYDRAFT_887762
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 150aa    MW: 16695.9 Da    PI: 6.2599
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
887762genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.90.000137761054
            HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
     HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
            + R d++ ++++ L++++ +      +K + a++L  A++YI  L
  887762 37 KERKDKVGERISALQQIVSPY-----GKTDTASVLLDAMHYIEFL 76
            67899999***********99.....9***************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.3472776IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-82787IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.76E-43281No hitNo description
SMARTSM003530.00423582IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-103789IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MDFSRDAGMM MENKRNVCSL EESSIKRHKS DLSFNSKERK DKVGERISAL QQIVSPYGKT  60
DTASVLLDAM HYIEFLHEQV KVLSAPYLQT IPDATQEEVE QYSLRNRGLC LVPMENTVGV  120
AQSNGADIWA PVKTPLSPAF SVTSQSPFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMap887762
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0878580.0AY087858.1 Arabidopsis thaliana clone 3900 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002889560.11e-109transcription factor bHLH153
RefseqXP_020869172.11e-109transcription factor bHLH153
RefseqXP_020869173.11e-109transcription factor bHLH153
RefseqXP_020869174.11e-109transcription factor bHLH153
SwissprotQ7XJU21e-107BH153_ARATH; Transcription factor bHLH153
TrEMBLD7KF721e-108D7KF72_ARALL; Uncharacterized protein
STRINGscaffold_100556.11e-109(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33162761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.51e-109bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]