PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 887599 | ||||||||
Common Name | ARALYDRAFT_887599 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ERF | ||||||||
Protein Properties | Length: 135aa MW: 14758.1 Da PI: 8.7728 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63 | 6.3e-20 | 20 | 70 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrd ++ g r++lg+f+tae+Aa+a+++a+ +++g 887599 20 KYRGVRRRP-WGKYAAEIRDSRKHG--ERVWLGTFDTAEDAARAYDRAAYSMRG 70 7********.**********65443..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.07E-18 | 20 | 79 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.6E-32 | 20 | 80 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.2E-14 | 20 | 70 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.0E-35 | 20 | 84 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-24 | 20 | 80 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.947 | 20 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.8E-12 | 21 | 32 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.8E-12 | 44 | 60 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MDQGGRSGGG GGGGGAEQMK YRGVRRRPWG KYAAEIRDSR KHGERVWLGT FDTAEDAARA 60 YDRAAYSMRG KAAILNFPHE YSMGTGSSST AASSSSSSRQ VFEFEYLDDS VLDELLEYGE 120 NYNKTHNINT GKRQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-52 | 1 | 111 | 1 | 114 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 11 | GGRSGGGGG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 887599 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains). Not affected by methyl jasmonate (MeJA), ethylene or salicylic acid (SA). {ECO:0000269|PubMed:11950980}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU351900 | 0.0 | EU351900.1 Arabidopsis lyrata At1g04370-like protein gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002889501.1 | 2e-94 | ethylene-responsive transcription factor 14 | ||||
Swissprot | P93822 | 9e-63 | ERF97_ARATH; Ethylene-responsive transcription factor 14 | ||||
TrEMBL | D7KDD7 | 4e-93 | D7KDD7_ARALL; Uncharacterized protein | ||||
STRING | scaffold_100393.1 | 7e-94 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04370.1 | 9e-60 | Ethylene-responsive element binding factor 14 |
Link Out ? help Back to Top | |
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Phytozome | 887599 |
Entrez Gene | 9328274 |