PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

886281

Common Name

ARALYDRAFT_685725

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

C2H2

Protein Properties

Length: 451aa MW: 50207.6 Da PI: 9.5001

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
886281	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.4	5.3e-05	72	94	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H 886281 72 FFCEICNKGFQREQNLQLHKRGH 94 67******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.87E-7	71	94	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.5E-5	71	94	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.803	72	94	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.009	72	94	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	5.0E-6	72	94	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	74	94	IPR007087	Zinc finger, C2H2
SMART	SM00355	120	114	144	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	9.9E-4	137	170	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.87E-7	144	169	No hit	No description
SMART	SM00355	260	149	169	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
MMIPHNHDRL SFSSFVHDQE ENITINPSPK SQPPASTNTP KKKRNLPGNP GMYPNAEVIA 60 LSPKSLMATN RFFCEICNKG FQREQNLQLH KRGHNLPWKL KQKTNKNQVK KKVYICPEKS 120 CVHHDPARAL GDLTGIKKHF SRKHGEKKWK CDKCSKKYAV ISDWKAHNKI CGSREFRCDC 180 GTLFSRKESF ISHRSFCDVL AKESAKFFSV PSPLAANSTI ATVADINNPI LIQSQLDQSS 240 IGNVNNNHTS LKFTNSNPIQ QQANAFALSS APSPVTTSDS VHNLWKLQEE ECSHQWLLNE 300 YMNNDKNIIQ KGIFKNQEDE IKKGNIYSGS NPTDANTASW LSYSQEAGNM ASLSATTLLH 360 KVAQMGSSSS SDTSTMFGLM TSSIFNNTLP KSNCFKANNK EEELTRDFLG VGSPDDQQQL 420 HHHHFPSSVP LTVNHNAPKL AATIVGKEAT *

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

MMIPHNHDRL SFSSFVHDQE ENITINPSPK SQPPASTNTP KKKRNLPGNP GMYPNAEVIA  60
LSPKSLMATN RFFCEICNKG FQREQNLQLH KRGHNLPWKL KQKTNKNQVK KKVYICPEKS  120
CVHHDPARAL GDLTGIKKHF SRKHGEKKWK CDKCSKKYAV ISDWKAHNKI CGSREFRCDC  180
GTLFSRKESF ISHRSFCDVL AKESAKFFSV PSPLAANSTI ATVADINNPI LIQSQLDQSS  240
IGNVNNNHTS LKFTNSNPIQ QQANAFALSS APSPVTTSDS VHNLWKLQEE ECSHQWLLNE  300
YMNNDKNIIQ KGIFKNQEDE IKKGNIYSGS NPTDANTASW LSYSQEAGNM ASLSATTLLH  360
KVAQMGSSSS SDTSTMFGLM TSSIFNNTLP KSNCFKANNK EEELTRDFLG VGSPDDQQQL  420
HHHHFPSSVP LTVNHNAPKL AATIVGKEAT *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	8e-30	145	210	3	68	Zinc finger protein JACKDAW
5b3h_F	8e-30	145	210	3	68	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	886281

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT026428	0.0	BT026428.1 Arabidopsis thaliana At5g60470 mRNA, complete cds.
GenBank	DQ056731	0.0	DQ056731.1 Arabidopsis thaliana zinc finger (C2H2 type) family protein (At5g60470) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020871537.1	0.0	protein indeterminate-domain 13
Swissprot	F4JYZ8	0.0	IDD13_ARATH; Protein indeterminate-domain 13
TrEMBL	D7MTU8	0.0	D7MTU8_ARALL; Predicted protein
STRING	Al_scaffold_0008_2545	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM155	28	306

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60470.1	0.0	C2H2 family protein

Link Out ? help Back to Top
Phytozome	886281
Entrez Gene	9302457

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]