PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 885879
Common NameARALYDRAFT_685323
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 463aa    MW: 52245.3 Da    PI: 9.9907
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
885879genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.58.9e-12290335555
             HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
     HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
             h + Er+RR+++N++f+ Lr+llP+      +K +Ka++L  A e ++sLq
  885879 290 HMISERKRREKLNESFQALRSLLPPG-----TKKDKASVLSIAREQLSSLQ 335
             8899********************97.....8**************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-15283350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.811285334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.19E-10287339No hitNo description
Gene3DG3DSA:4.10.280.101.3E-13289353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-9290335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.5E-13291340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MMHLILSCSY LISMDGYYNE ASEEPSSSSS SGSLARSLFH EYRQSVIPLQ NGHVPSMAFM  60
NNLPYVEIRP QEIQRLAFND AQRLFYQMKI EASLREWFPE DFNRKSSPVN SDYLRPPHHP  120
SSSSSSLSPN NVSEYSSLLF PLIPKPSTTT EAVNVPVLPP LAPVNMIHQQ QQEPLFRNRE  180
REEEAMTKAI LAVLTGPSSP PSTSSSPQRK RRATAFNRYY SMISGHGRAP LPSLRKQSMM  240
KRAISFYNRL NIYQRERFTR ENATTHGEGS GGSSGGGRYT SGPSATQLHH MISERKRREK  300
LNESFQALRS LLPPGTKKDK ASVLSIAREQ LSSLQGEISK LLERNRKLEA KLAGERDIIN  360
DLLPNERFNV HISHISESTS RERILDLRVV LRGDSIRVDD LMIRLLEFLK QINNVSLVSI  420
EARTRARDTS VVLVSLRLKI EGECDESAFQ EAVRRVVADL AH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1293298ERKRRE
2294299RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMap885879
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0240350.0AB024035.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHM17.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020879239.10.0putative transcription factor bHLH041
SwissprotQ9LTS40.0BH041_ARATH; Putative transcription factor bHLH041
TrEMBLD7MM880.0D7MM88_ARALL; Predicted protein
STRINGAl_scaffold_0008_21430.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70602840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]