PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 885378
Common NameARALYDRAFT_684822
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 203aa    MW: 23286.2 Da    PI: 8.8159
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
885378genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.25.7e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W +eEd +l+ +v+ +G g+W+ I+r+ g++R +k+c++rw +yl
           885378 14 RGLWQPEEDMILKSCVETHGEGNWADISRRSGLKRGGKSCRLRWKNYL 61
                     788*****************************99************97 PP

2Myb_DNA-binding51.91.8e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++++E++l+++ +k+lG++ W++Ia +++ gRt++++k++w+++l
           885378  67 RGSMSPQEQDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 112
                      899*******************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.812961IPR017930Myb domain
SMARTSM007171.0E-131363IPR001005SANT/Myb domain
SuperFamilySSF466897.7E-2913108IPR009057Homeodomain-like
PfamPF002492.7E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-211568IPR009057Homeodomain-like
CDDcd001672.45E-101761No hitNo description
PROSITE profilePS5129425.72962116IPR017930Myb domain
SMARTSM007174.9E-1666114IPR001005SANT/Myb domain
PfamPF002494.7E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.9E-2469115IPR009057Homeodomain-like
CDDcd001671.40E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MEHKRAEGKS YVKRGLWQPE EDMILKSCVE THGEGNWADI SRRSGLKRGG KSCRLRWKNY  60
LRPNIKRGSM SPQEQDLIIR MHKLLGNRWS LIAGRLPGRT DNEVKNYWNT HLNKKSSSRK  120
QNAPESIGAT PFTDKPVMST ELRRSHGEEG EGEEESNTWM EETNHFGYDV HVGSPLPLIS  180
HYPDNTLVFD PCFAFTDFFP LL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-23141187110B-MYB
1h8a_C4e-231211525127MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap885378
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5196370.0AY519637.1 Arabidopsis thaliana MYB transcription factor (At5g52600) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002865922.11e-151transcription factor MYB82
SwissprotQ9LTF71e-138MYB82_ARATH; Transcription factor MYB82
TrEMBLD7MS681e-150D7MS68_ARALL; Predicted protein
STRINGAl_scaffold_0008_16421e-150(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.11e-136myb domain protein 82