PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 885378 | ||||||||
Common Name | ARALYDRAFT_684822 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB | ||||||||
Protein Properties | Length: 203aa MW: 23286.2 Da PI: 8.8159 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.2 | 5.7e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W +eEd +l+ +v+ +G g+W+ I+r+ g++R +k+c++rw +yl 885378 14 RGLWQPEEDMILKSCVETHGEGNWADISRRSGLKRGGKSCRLRWKNYL 61 788*****************************99************97 PP | |||||||
2 | Myb_DNA-binding | 51.9 | 1.8e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++++E++l+++ +k+lG++ W++Ia +++ gRt++++k++w+++l 885378 67 RGSMSPQEQDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 112 899*******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.812 | 9 | 61 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.7E-29 | 13 | 108 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.7E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-21 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.45E-10 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.729 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 4.9E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.9E-24 | 69 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.40E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010026 | Biological Process | trichome differentiation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MEHKRAEGKS YVKRGLWQPE EDMILKSCVE THGEGNWADI SRRSGLKRGG KSCRLRWKNY 60 LRPNIKRGSM SPQEQDLIIR MHKLLGNRWS LIAGRLPGRT DNEVKNYWNT HLNKKSSSRK 120 QNAPESIGAT PFTDKPVMST ELRRSHGEEG EGEEESNTWM EETNHFGYDV HVGSPLPLIS 180 HYPDNTLVFD PCFAFTDFFP LL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-23 | 14 | 118 | 7 | 110 | B-MYB |
1h8a_C | 4e-23 | 12 | 115 | 25 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 885378 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY519637 | 0.0 | AY519637.1 Arabidopsis thaliana MYB transcription factor (At5g52600) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002865922.1 | 1e-151 | transcription factor MYB82 | ||||
Swissprot | Q9LTF7 | 1e-138 | MYB82_ARATH; Transcription factor MYB82 | ||||
TrEMBL | D7MS68 | 1e-150 | D7MS68_ARALL; Predicted protein | ||||
STRING | Al_scaffold_0008_1642 | 1e-150 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52600.1 | 1e-136 | myb domain protein 82 |
Link Out ? help Back to Top | |
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Phytozome | 885378 |
Entrez Gene | 9300261 |